Evidence map›Paper›PMID 26894529›Full record

ArticleActa crystallographica. Section D, Structural biology2016

High-density grids for efficient data collection from multiple crystals.

Elizabeth L Baxter, Laura Aguila, Roberto Alonso-Mori, Christopher O Barnes, Christopher A Bonagura, Winnie Brehmer, Axel T Brunger, Guillermo Calero, Tom T Caradoc-Davies, Ruchira Chatterjee and 23 more

Open access · hybridAbstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 75 citations in OpenAlex.

  1. Article
  2. Microfluidic Devices for High-Throughput In Situ Serial Crystallography.Advances in biochemical engineering/biotechnology · 2026
    Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Deep residual networks for crystallography trained on synthetic data.Acta crystallographica. Section D, Structural biology · 2024
    Article
  8. Article
  9. Review
  10. Review
  11. Serial femtosecond crystallography.Nature reviews. Methods primers · 2022
    Article
  12. Article
  13. Dynamic Structural Biology Experiments at XFEL or Synchrotron Sources.Methods in molecular biology (Clifton, N.J.) · 2021
    Review
  14. Review
  15. The crystal structure of dGTPase reveals the molecular basis of dGTP selectivity.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  16. Article
  17. Article
  18. XFEL structures of the influenza M2 proton channel: Room temperature water networks and insights into proton conduction.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors at 11 institutions in 3 countries.

Elizabeth L BaxterStanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.
Laura AguilaStanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.
Roberto Alonso-MoriLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.
Christopher O BarnesDepartment of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261, USA.
Christopher A BonaguraArt Robbins Instruments, Sunnyvale, CA 94089, USA.
Winnie BrehmerStanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.
Axel T BrungerDepartment of Molecular and Cellular Physiology, Stanford University, Stanford, CA 94305, USA.
Guillermo CaleroDepartment of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261, USA.
Tom T Caradoc-DaviesThe ARC Centre of Excellence in Advanced Molecular Imaging, Monash University, Melbourne, Victoria 3800, Australia.
Ruchira ChatterjeePhysical Bioscences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
William F DegradoDepartment of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, CA 94158, USA.
James S FraserDepartment of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA 94158, USA.
Mohamed IbrahimInstitut für Biologie, Humboldt-Universität zu Berlin, 10099 Berlin, Germany.
Jan KernLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.
Brian K KobilkaDepartment of Molecular and Cellular Physiology, Stanford University, Stanford, CA 94305, USA.
Andrew C KruseDepartment of Molecular and Cellular Physiology, Stanford University, Stanford, CA 94305, USA.
Karl M LarssonStanford University School of Medicine, Stanford, CA 94305, USA.
Heinrik T LemkeLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.
Artem Y LyubimovDepartment of Molecular and Cellular Physiology, Stanford University, Stanford, CA 94305, USA.
Aashish ManglikDepartment of Molecular and Cellular Physiology, Stanford University, Stanford, CA 94305, USA.
Scott E McPhillipsStanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.
Erik NorgrenArt Robbins Instruments, Sunnyvale, CA 94089, USA.
Siew S PangThe ARC Centre of Excellence in Advanced Molecular Imaging, Monash University, Melbourne, Victoria 3800, Australia.
S M SoltisStanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.
Jinhu SongStanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.
Jessica ThomastonDepartment of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, CA 94158, USA.
Yingssu TsaiStanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.
William I WeisDepartment of Molecular and Cellular Physiology, Stanford University, Stanford, CA 94305, USA.
Rahel A WoldeyesDepartment of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA 94158, USA.
Vittal YachandraPhysical Bioscences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Junko YanoPhysical Bioscences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Athina ZouniInstitut für Biologie, Humboldt-Universität zu Berlin, 10099 Berlin, Germany.
Aina E CohenStanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.
SLAC National Accelerator Laboratory · USStanford University · USLawrence Berkeley National Laboratory · USUniversity of California, San Francisco · USStanford Synchrotron Radiation Lightsource · USHumboldt-Universität zu Berlin · DEUniversity of Pittsburgh · USARC Centre of Excellence in Advanced Molecular Imaging · AUHoward Hughes Medical Institute · USLinac Coherent Light Source · USMonash University · AU

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Taking Snapshots of the Water-Oxidation Reaction by the Mn4Ca Oxygen-Evolving Complex Using X-ray Crystallography and SpectroscopyR01GM055302 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI YACHANDRA, VITTAL · 1997 to 2022
$9.1M
RESEARCH TRAINING IN CHEMISTRY AND CHEMICAL BIOLOGYT32GM064337 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CRAIK, CHARLES SCOTT · 2002 to 2021
$7.8M
Molecular Biophysics Training Program at StanfordT32GM008294 · NIGMS · STANFORD UNIVERSITY · PI HUANG, KERWYN C. · 1989 to 2019
$7.4M
Biological Spectroscopy and Crystallography Using an X-ray Free Electron Laser - Supplemental EquipmentR01GM110501 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI Junko Yano · 2014 to 2026
$4.8M
PREDOCTORAL TRAINING IN PHARMACOLOGICAL SCIENCEST32GM008424 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI PAGANO, PATRICK J · 1994 to 2019
$3.4M
Structural Studies of RNA Polymerase II Transcription Initiation and ElongationR01GM112686 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CALERO, GUILLERMO ALBERTO · 2015 to 2024
$2.8M
Structure and Function of the Mn Oxygen-Evolving ComplexR56GM055302 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI YACHANDRA, VITTAL · 2009 to 2009
$530k
Model Comparison in Structural BiologyR21GM110580 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FRASER, JAMES SOLOMON · 2014 to 2015
$419k
Howard Hughes Medical InstituteNIGMS NIH HHS GM055302NIGMS NIH HHS GM110501NIGMS NIH HHS NIH GM110580NIGMS NIH HHS P41 GM103393NIGMS NIH HHS P41GM103393NIGMS NIH HHS R01 GM055302NIGMS NIH HHS R01 GM110501NIGMS NIH HHS R01 GM112686NIGMS NIH HHS R21 GM110580NIGMS NIH HHS R56 GM055302NIGMS NIH HHS T32 GM008294NIGMS NIH HHS T32 GM008424NIGMS NIH HHS T32 GM064337
6 · The paper itself

Abstract

Higher throughput methods to mount and collect data from multiple small and radiation-sensitive crystals are important to support challenging structural investigations using microfocus synchrotron beamlines. Furthermore, efficient sample-delivery methods are essential to carry out productive femtosecond crystallography experiments at X-ray free-electron laser (XFEL) sources such as the Linac Coherent Light Source (LCLS). To address these needs, a high-density sample grid useful as a scaffold for both crystal growth and diffraction data collection has been developed and utilized for efficient goniometer-based sample delivery at synchrotron and XFEL sources. A single grid contains 75 mounting ports and fits inside an SSRL cassette or uni-puck storage container. The use of grids with an SSRL cassette expands the cassette capacity up to 7200 samples. Grids may also be covered with a polymer film or sleeve for efficient room-temperature data collection from multiple samples. New automated routines have been incorporated into the Blu-Ice/DCSS experimental control system to support grids, including semi-automated grid alignment, fully automated positioning of grid ports, rastering and automated data collection. Specialized tools have been developed to support crystallization experiments on grids, including a universal adaptor, which allows grids to be filled by commercial liquid-handling robots, as well as incubation chambers, which support vapor-diffusion and lipidic cubic phase crystallization experiments. Experiments in which crystals were loaded into grids or grown on grids using liquid-handling robots and incubation chambers are described. Crystals were screened at LCLS-XPP and SSRL BL12-2 at room temperature and cryogenic temperatures.

Indexed as

AnimalsCrystallizationCrystallography, X-RayData CollectionDiffusionEquipment DesignHumansTemperatureVolatilizationautomation for sample-exchange robotshigh-throughput crystallographysample deliveryserial crystallographyXFELs

Identifiers

PMID26894529
PMCPMC4756618
OpenAlexW2233134558

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.