Evidence map›Paper›PMID 26893970›Full record

ArticlePeerJ2016

Spatial structure arising from neighbour-dependent bias in collective cell movement.

Rachelle N Binny, Parvathi Haridas, Alex James, Richard Law, Matthew J Simpson, Michael J Plank

Abstract read
In one paragraph

Article in PeerJ, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Detection and characterization of chemotaxis without cell tracking.Journal of the Royal Society, Interface · 2021
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Rachelle N BinnySchool of Mathematics and Statistics, University of Canterbury, Christchurch, New Zealand; Te Pūnaha Matatini, New Zealand; Landcare Research-Manaaki Whenua, Lincoln, New Zealand.
Parvathi HaridasInstitute of Health and Biomedical Innovation, Queensland University of Technology , Brisbane , Australia.
Alex JamesSchool of Mathematics and Statistics, University of Canterbury, Christchurch, New Zealand; Te Pūnaha Matatini, New Zealand.
Richard LawYork Centre for Complex Systems Analysis, Ron Cooke Hub, University of York , York , United Kingdom.
Matthew J SimpsonInstitute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Australia; School of Mathematical Sciences, Queensland University of Technology, Brisbane, Australia.
Michael J PlankSchool of Mathematics and Statistics, University of Canterbury, Christchurch, New Zealand; Te Pūnaha Matatini, New Zealand.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mathematical models of collective cell movement often neglect the effects of spatial structure, such as clustering, on the population dynamics. Typically, they assume that individuals interact with one another in proportion to their average density (the mean-field assumption) which means that cell-cell interactions occurring over short spatial ranges are not accounted for. However, in vitro cell culture studies have shown that spatial correlations can play an important role in determining collective behaviour. Here, we take a combined experimental and modelling approach to explore how individual-level interactions give rise to spatial structure in a moving cell population. Using imaging data from in vitro experiments, we quantify the extent of spatial structure in a population of 3T3 fibroblast cells. To understand how this spatial structure arises, we develop a lattice-free individual-based model (IBM) and simulate cell movement in two spatial dimensions. Our model allows an individual's direction of movement to be affected by interactions with other cells in its neighbourhood, providing insights into how directional bias generates spatial structure. We consider how this behaviour scales up to the population level by using the IBM to derive a continuum description in terms of the dynamics of spatial moments. In particular, we account for spatial correlations between cells by considering dynamics of the second spatial moment (the average density of pairs of cells). Our numerical results suggest that the moment dynamics description can provide a good approximation to averaged simulation results from the underlying IBM. Using our in vitro data, we estimate parameters for the model and show that it can generate similar spatial structure to that observed in a 3T3 fibroblast cell population.

Indexed as

Cell migrationCollective movementDirected movementIndividual-based modelSpatial correlationsSpatial moment dynamics

Identifiers

PMID26893970
PMCPMC4756733

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.