Evidence map›Paper›PMID 26892637›Full record

ArticleScientific reports2016

Antibiotic binding of STY3178, a yfdX protein from Salmonella Typhi.

Paramita Saha, Camelia Manna, Santasabuj Das, Mahua Ghosh

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
4.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Structural and Physiological Exploration ofFrontiers in microbiology · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Paramita SahaDepartment of Chemical, Biological And Macromolecular Sciences, S. N. Bose National Centre for Basic Sciences, Block JD, Sector III, Salt lake, Kolkata 700098, India.
Camelia MannaDepartment of Chemical, Biological And Macromolecular Sciences, S. N. Bose National Centre for Basic Sciences, Block JD, Sector III, Salt lake, Kolkata 700098, India.
Santasabuj DasDivision of Clinical Medicine, National Institute of Cholera and Enteric Diseases, P-33, C.I.T. Road, Scheme XM Beleghata, Kolkata 700 010, India.
Mahua GhoshDepartment of Chemical, Biological And Macromolecular Sciences, S. N. Bose National Centre for Basic Sciences, Block JD, Sector III, Salt lake, Kolkata 700098, India.
S.N. Bose National Centre for Basic Sciences · INNational Institute of Cholera and Enteric Diseases · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The yfdX family proteins are known for long time to occur in various virulent bacteria including their multidrug resistant (MDR) strains, without any direct assigned function for them. However, yfdX protein along with other proteins involved in acid tolerance response is reported to be up regulated by the multidrug response regulatory system in E. coli. Hence, molecular and functional characterization of this protein is important for understanding of key cellular processes in bacterial cells. Here we study STY3178, a yfdX protein from a MDR strain of typhoid fever causing Salmonella Typhi. Our experimental results indicate that STY3178 is a helical protein existing in a trimeric oligomerization state in solution. We also observe many small antibiotics, like ciprofloxacin, rifampin and ampicillin viably interact with this protein. The dissociation constants from the quenching of steady state fluorescence and isothermal titration calorimetry show that ciprofloxacin binding is stronger than rifampin followed by ampicillin.

Indexed as

Anti-Bacterial AgentsBacterial ProteinsGene ExpressionNuclear Magnetic Resonance, BiomolecularProtein AggregatesProtein BindingRecombinant ProteinsSalmonella typhiAnti-Bacterial AgentsBacterial ProteinsProtein AggregatesRecombinant Proteins

Identifiers

PMID26892637
PMCPMC4759549
OpenAlexW2274688107

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.