Evidence map›Paper›PMID 26891179›Full record

ArticlePLoS biology2016

Interactome Mapping Reveals the Evolutionary History of the Nuclear Pore Complex.

Samson O Obado, Marc Brillantes, Kunihiro Uryu, Wenzhu Zhang, Natalia E Ketaren, Brian T Chait, Mark C Field, Michael P Rout

Abstract read
In one paragraph

Article in PLoS biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed.

  1. Article
  2. Article
  3. Structure, function and assembly of nuclear pore complexes.Nature reviews. Molecular cell biology · 2026
    Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Multifunctional Roles of Sec13 Paralogues in the EuglenozoanbioRxiv : the preprint server for biology · 2024
    Article
  9. Article
  10. Evolutionary trajectory for nuclear functions of ciliary transport complex proteins.Microbiology and molecular biology reviews : MMBR · 2024
    Review
  11. Article
  12. Article
  13. The Molecular Architecture of the Nuclear Basket.bioRxiv : the preprint server for biology · 2024
    Article
  14. On the origin of the nucleus: a hypothesis.Microbiology and molecular biology reviews : MMBR · 2023
    Review
  15. Review
  16. Article
  17. TgKDAC4: A Unique Deacetylase ofMicroorganisms · 2023
    Article
  18. Article
  19. Article
  20. Article

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Samson O ObadoThe Rockefeller University, New York, New York, United States of America.
Marc BrillantesThe Rockefeller University, New York, New York, United States of America.
Kunihiro UryuThe Rockefeller University, New York, New York, United States of America.
Wenzhu ZhangThe Rockefeller University, New York, New York, United States of America.
Natalia E KetarenThe Rockefeller University, New York, New York, United States of America.
Brian T ChaitThe Rockefeller University, New York, New York, United States of America.
Mark C FieldSchool of Life Sciences, University of Dundee, Dundee, Scotland, United Kingdom.
Michael P RoutThe Rockefeller University, New York, New York, United States of America.

Funding

TR&D Project 4. The Imaging Stage: Multiscale Spatiotemporal Modeling of Macromolecular Systems in Cellular NeighborhoodsP41GM109824 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2014 to 2023
$18.8M
National Resource for Mass Spectrom of Biological MacromoleculesP41GM103314 · NIGMS · ROCKEFELLER UNIVERSITY · PI CHAIT, BRIAN T · 2012 to 2017
$9.9M
New Tools for Exploring the Dynamic Interactome (Renewal)U54GM103511 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2012 to 2013
$6.2M
The development of tools for proteomic analysis in trypanosomesR21AI096069 · NIAID · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2011 to 2012
$466k
NIAID NIH HHS 1R21AI096069NIAID NIH HHS R21 AI096069NIGMS NIH HHS GM103314NIGMS NIH HHS GM103511NIGMS NIH HHS GM109824NIGMS NIH HHS P41 GM103314NIGMS NIH HHS P41 GM109824NIGMS NIH HHS U54 GM103511Wellcome TrustWellcome Trust 082813/Z/07/Z
6 · The paper itself

Abstract

The nuclear pore complex (NPC) is responsible for nucleocytoplasmic transport and constitutes a hub for control of gene expression. The components of NPCs from several eukaryotic lineages have been determined, but only the yeast and vertebrate NPCs have been extensively characterized at the quaternary level. Significantly, recent evidence indicates that compositional similarity does not necessarily correspond to homologous architecture between NPCs from different taxa. To address this, we describe the interactome of the trypanosome NPC, a representative, highly divergent eukaryote. We identify numerous new NPC components and report an exhaustive interactome, allowing assignment of trypanosome nucleoporins to discrete NPC substructures. Remarkably, despite retaining similar protein composition, there are exceptional architectural dissimilarities between opisthokont (yeast and vertebrates) and excavate (trypanosomes) NPCs. Whilst elements of the inner core are conserved, numerous peripheral structures are highly divergent, perhaps reflecting requirements to interface with divergent nuclear and cytoplasmic functions. Moreover, the trypanosome NPC has almost complete nucleocytoplasmic symmetry, in contrast to the opisthokont NPC; this may reflect divergence in RNA export processes at the NPC cytoplasmic face, as we find evidence supporting Ran-dependent mRNA export in trypanosomes, similar to protein transport. We propose a model of stepwise acquisition of nucleocytoplasmic mechanistic complexity and demonstrate that detailed dissection of macromolecular complexes provides fuller understanding of evolutionary processes.

Indexed as

Evolution, MolecularMicroscopy, ImmunoelectronNuclear PoreNuclear Pore Complex ProteinsProtein Structure, QuaternaryTrypanosoma brucei bruceiNuclear Pore Complex Proteins

Identifiers

PMID26891179
PMCPMC4758718

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.