Evidence map›Paper›PMID 26891149›Full record

ArticleEpigenetics2016

Epigenetic silencing of AKAP12 in juvenile myelomonocytic leukemia.

Thomas Wilhelm, Daniel B Lipka, Tania Witte, Justyna A Wierzbinska, Silvia Fluhr, Monika Helf, Oliver Mücke, Rainer Claus, Carolin Konermann, Peter Nöllke and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Epigenetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Current Treatment of Juvenile Myelomonocytic Leukemia.Journal of clinical medicine · 2021
    Review
  6. International Consensus Definition of DNA Methylation Subgroups in Juvenile Myelomonocytic Leukemia.Clinical cancer research : an official journal of the American Association for Cancer Research · 2021
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Thomas Wilhelma Division of Epigenomics and Cancer Risk Factors, German Cancer Research Center , Heidelberg , Germany.
Daniel B Lipkab Regulation of Cellular Differentiation Group, Division of Epigenomics and Cancer Risk Factors, German Cancer Research Center , Heidelberg , Germany.
Tania Wittea Division of Epigenomics and Cancer Risk Factors, German Cancer Research Center , Heidelberg , Germany.
Justyna A Wierzbinskaa Division of Epigenomics and Cancer Risk Factors, German Cancer Research Center , Heidelberg , Germany.
Silvia Fluhrc Department of Pediatrics and Adolescent Medicine , Division of Pediatric Hematology-Oncology, University of Freiburg Medical Center , Freiburg , Germany.
Monika Helfb Regulation of Cellular Differentiation Group, Division of Epigenomics and Cancer Risk Factors, German Cancer Research Center , Heidelberg , Germany.
Oliver Mückea Division of Epigenomics and Cancer Risk Factors, German Cancer Research Center , Heidelberg , Germany.
Rainer Clausa Division of Epigenomics and Cancer Risk Factors, German Cancer Research Center , Heidelberg , Germany.
Carolin Konermanna Division of Epigenomics and Cancer Risk Factors, German Cancer Research Center , Heidelberg , Germany.
Peter Nöllkec Department of Pediatrics and Adolescent Medicine , Division of Pediatric Hematology-Oncology, University of Freiburg Medical Center , Freiburg , Germany.
Charlotte M Niemeyerc Department of Pediatrics and Adolescent Medicine , Division of Pediatric Hematology-Oncology, University of Freiburg Medical Center , Freiburg , Germany.
Christian Flothoc Department of Pediatrics and Adolescent Medicine , Division of Pediatric Hematology-Oncology, University of Freiburg Medical Center , Freiburg , Germany.
Christoph Plassa Division of Epigenomics and Cancer Risk Factors, German Cancer Research Center , Heidelberg , Germany.
German Cancer Research Center · DEUniversity Medical Center Freiburg · DEEpigenomics (Germany) · DEHeidelberg University · DEUniversity of Freiburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A-kinase anchor protein 12 (AKAP12) is a regulator of protein kinase A and protein kinase C signaling, acting downstream of RAS. Epigenetic silencing of AKAP12 has been demonstrated in different cancer entities and this has been linked to the process of tumorigenesis. Here, we used quantitative high-resolution DNA methylation measurement by MassARRAY to investigate epigenetic regulation of all three AKAP12 promoters (i.e., α, β, and γ) within a large cohort of juvenile myelomonocytic leukemia (JMML) patient samples. The AKAP12α promoter shows DNA hypermethylation in JMML samples, which is associated with decreased AKAP12α expression. Promoter methylation of AKAP12α correlates with older age at diagnosis, elevated levels of fetal hemoglobin and poor prognosis. In silico screening for transcription factor binding motifs around the sites of most pronounced methylation changes in the AKAP12α promoter revealed highly significant scores for GATA-2/-1 sequence motifs. Both transcription factors are known to be involved in the haematopoietic differentiation process. Methylation of a reporter construct containing this region resulted in strong suppression of AKAP12 promoter activity, suggesting that DNA methylation might be involved in the aberrant silencing of the AKAP12 promoter in JMML. Exposure to DNMT- and HDAC-inhibitors reactivates AKAP12α expression in vitro, which could potentially be a mechanism underlying clinical treatment responses upon demethylating therapy. Together, these data provide evidence for epigenetic silencing of AKAP12α in JMML and further emphasize the importance of dysregulated RAS signaling in JMML pathogenesis.

Indexed as

DNA MethylationGene SilencingPromoter Regions, GeneticA Kinase Anchor ProteinsCell Cycle ProteinsCell Line, TumorChild, PreschoolFemaleGenes, rasHumansInfantLeukemia, Myelomonocytic, JuvenileMaleSignal TransductionAKAP12 protein, humanA Kinase Anchor ProteinsCell Cycle ProteinsAKAP12AzacytidineDNA methylationEpigeneticsHematopoiesisJuvenile myelomonocytic leukemiaLeukemia

Identifiers

PMID26891149
PMCPMC4846096
OpenAlexW2281806387

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.