Evidence map›Paper›PMID 26891031›Full record

ArticleJournal of visualized experiments : JoVE2016

Tracking Cells in GFP-transgenic Zebrafish Using the Photoconvertible PSmOrange System.

Carlo A Beretta, Nicolas Dross, Ulrike Engel, Matthias Carl

Open access · bronzeAbstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.5field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Carlo A BerettaMedical Faculty Mannheim, Department of Cell and Molecular Biology, Heidelberg University; COS and Nikon Imaging Center at the University of Heidelberg, Heidelberg University; Excellenzcluster CellNetworks, University of Heidelberg.
Nicolas DrossCOS and Nikon Imaging Center at the University of Heidelberg, Heidelberg University.
Ulrike EngelCOS and Nikon Imaging Center at the University of Heidelberg, Heidelberg University.
Matthias CarlMedical Faculty Mannheim, Department of Cell and Molecular Biology, Heidelberg University; matthias.carl@medma.uni-heidelberg.de.
University Hospital Heidelberg · DEHeidelberg University · DENikon (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The rapid development of transparent zebrafish embryos (Danio rerio) in combination with fluorescent labelings of cells and tissues allows visualizing developmental processes as they happen in the living animal. Cells of interest can be labeled by using a tissue specific promoter to drive the expression of a fluorescent protein (FP) for the generation of transgenic lines. Using fluorescent photoconvertible proteins for this purpose additionally allows to precisely follow defined structures within the expression domain. Illuminating the protein in the region of interest, changes its emission spectrum and highlights a particular cell or cell cluster leaving other transgenic cells in their original color. A major limitation is the lack of known promoters for a large number of tissues in the zebrafish. Conversely, gene- and enhancer trap screens have generated enormous transgenic resources discretely labeling literally all embryonic structures mostly with GFP or to a lesser extend red or yellow FPs. An approach to follow defined structures in such transgenic backgrounds would be to additionally introduce a ubiquitous photoconvertible protein, which could be converted in the cell(s) of interest. However, the photoconvertible proteins available involve a green and/or less frequently a red emission state and can therefore often not be used to track cells in the FP-background of existing transgenic lines. To circumvent this problem, we have established the PSmOrange system for the zebrafish. Simple microinjection of synthetic mRNA encoding a nuclear form of this protein labels all cell nuclei with orange/red fluorescence. Upon targeted photoconversion of the protein, it switches its emission spectrum to far red. The quantum efficiency and stability of the protein makes PSmOrange a superb cell-tracking tool for zebrafish and possibly other teleost species.

Indexed as

AnimalsAnimals, Genetically ModifiedCell TrackingGreen Fluorescent ProteinsLuminescent ProteinsPromoter Regions, GeneticRNA, MessengerZebrafishGreen Fluorescent ProteinsLuminescent ProteinsRNA, Messenger

Identifiers

PMID26891031
PMCPMC4781723
OpenAlexW2257001924

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.