Evidence map›Paper›PMID 26890675›Full record

ArticlePloS one2016

Whole-Genome Sequencing of Methicillin-Resistant Staphylococcus aureus Resistant to Fifth-Generation Cephalosporins Reveals Potential Non-mecA Mechanisms of Resistance.

Alexander L Greninger, Som S Chatterjee, Liana C Chan, Stephanie M Hamilton, Henry F Chambers, Charles Y Chiu

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 66 citations in OpenAlex.

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  15. Identification ofAntibiotics (Basel, Switzerland) · 2022
    Article
  16. Molecular Mechanisms of Drug Resistance inInternational journal of molecular sciences · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Alexander L GreningerDepartment of Laboratory Medicine, University of California San Francisco, San Francisco, California, United States of America.
Som S ChatterjeeDivision of Infectious Diseases, Department of Medicine, San Francisco General Hospital, San Francisco, California, United States of America.
Liana C ChanDivision of Infectious Diseases, Department of Medicine, San Francisco General Hospital, San Francisco, California, United States of America.
Stephanie M HamiltonDivision of Infectious Diseases, Department of Medicine, San Francisco General Hospital, San Francisco, California, United States of America.
Henry F ChambersDivision of Infectious Diseases, Department of Medicine, San Francisco General Hospital, San Francisco, California, United States of America.
Charles Y ChiuDepartment of Laboratory Medicine, University of California San Francisco, San Francisco, California, United States of America.
San Francisco General Hospital · USAbbott (United States) · USGlobal Viral · US

Funding

Pan-Genomic Approaches for Comprehensive Blood Screening of Novel or Emerging Infectious AgentsR01HL105704 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHIU, CHARLES YEN · 2011 to 2020
$5.9M
Novel Mechanisms of Beta-lactam Resistance in Staph AureusR01AI100291 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI CHATTERJEE, SOM, HENRY CHAMBERS, HENRY F · 2013 to 2023
$5.1M
NHLBI NIH HHS R01 HL105704NHLBI NIH HHS R01-HL105704NIAID NIH HHS R01 AI100291NIAID NIH HHS R01-AI100291
6 · The paper itself

Abstract

Fifth-generation cephalosporins, ceftobiprole and ceftaroline, are promising drugs for treatment of bacterial infections from methicillin-resistant Staphylococcus aureus (MRSA). These antibiotics are able to bind native PBP2a, the penicillin-binding protein encoded by the mecA resistance determinant that mediates broad class resistance to nearly all other beta-lactam antibiotics, at clinically achievable concentrations. Mechanisms of resistance to ceftaroline based on mecA mutations have been previously described. Here we compare the genomes of 11 total parent-daughter strains of Staphylococcus aureus for which specific selection by serial passaging with ceftaroline or ceftobiprole was used to identify novel non-mecA mechanisms of resistance. All 5 ceftaroline-resistant strains, derived from 5 different parental strains, contained mutations directly upstream of the pbp4 gene (coding for the PBP4 protein), including four with the same thymidine insertion located 377 nucleotides upstream of the promoter site. In 4 of 5 independent ceftaroline-driven selections, we also isolated mutations to the same residue (Asn138) in PBP4. In addition, mutations in additional candidate genes such as ClpX endopeptidase, PP2C protein phosphatase and transcription terminator Rho, previously undescribed in the context of resistance to ceftaroline or ceftobiprole, were detected in multiple selections. These genomic findings suggest that non-mecA mechanisms, while yet to be encountered in the clinical setting, may also be important in mediating resistance to 5th-generation cephalosporins.

Indexed as

Genome, BacterialSequence Analysis, DNABacterial Proteinsbeta-LactamsCeftarolineCephalosporinsMethicillin ResistanceMethicillin-Resistant Staphylococcus aureusModels, MolecularMutationOpen Reading FramesPenicillin-Binding ProteinsPromoter Regions, GeneticBacterial Proteinsbeta-LactamsCeftarolineCephalosporinsPenicillin-Binding Proteins

Identifiers

PMID26890675
PMCPMC4758708
OpenAlexW2274658171

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.