Evidence map›Paper›PMID 26890332›Full record

ArticleGenes and immunity2016

DNA demethylation of the TIM-3 promoter is critical for its stable expression on T cells.

F-C Chou, C-C Kuo, H-Y Chen, H-H Chen, H-K Sytwu

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Genes and immunity, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

F-C ChouDepartment and Graduate Institute of Microbiology and Immunology, National Defense Medical Center, Taipei, Taiwan.
C-C KuoDepartment and Graduate Institute of Microbiology and Immunology, National Defense Medical Center, Taipei, Taiwan.
H-Y ChenGraduate Institutes of Life Sciences, National Defense Medical Center, Taipei, Taiwan.
H-H ChenDepartment of Medicine, National Defense Medical Center, Taipei, Taiwan.
H-K SytwuDepartment and Graduate Institute of Microbiology and Immunology, National Defense Medical Center, Taipei, Taiwan.
National Defense Medical Center · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The T-cell immunoglobulin and mucin domain-containing protein 3 (TIM-3) is selectively expressed on terminally differentiated T helper 1 (Th1) cells and acts as a negative regulator that terminates Th1 responses. The dysregulation of TIM-3 expression on T cells is associated with several autoimmune phenotypes and with chronic viral infections; however, the mechanism of this regulation is unclear. In this study, we investigated the effect of DNA methylation on the expression of TIM-3. By analyzing the sequences of TIM-3 promoter regions in human and mouse, we identified a CpG island within the TIM-3 promoter and demonstrated that the promoter activity was controlled by DNA methylation. Furthermore, treatment with 5-aza-2'-deoxycytidine enhanced TIM-3 expression on mouse primary CD4(+) T cells under Th0-, Th1- or Th2-polarizing conditions. Finally, pyrosequencing analysis revealed that the methylation level of the TIM-3 promoter gradually decreased after each round of T-cell polarization, and this decrease was inversely correlated with TIM-3 expression. These data suggest that the DNA methylation of the TIM-3 promoter cooperates with lineage-specific transcription factors in the control of Th-cell development. In conclusion, DNA methylation-based regulation of TIM-3 may provide novel insights into understanding the dysregulation of TIM-3 expression under pathogenic conditions.

Indexed as

DNA MethylationPromoter Regions, GeneticAnimalsCell LineageCpG IslandsHepatitis A Virus Cellular Receptor 2HumansJurkat CellsMiceT-Lymphocytes, Helper-InducerTranscription FactorsHavcr2 protein, mouseHepatitis A Virus Cellular Receptor 2Transcription Factors

Identifiers

PMID26890332
OpenAlexW2297715351

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.