Evidence map›Paper›PMID 26889984›Full record

ArticleCancer biomarkers : section A of Disease markers2016

Novel mutations of PIK3CA gene in head and neck squamous cell carcinoma.

Ali M Al-Amri, Chittibabu Vatte, Cyril Cyrus, Shahanas Chathoth, Tariq Mohammad Hashim, Yehia S Mohamed, Rudaynah Al Ali, Abir Alsaid, Amein Al Ali

Abstract read
In one paragraph

Article in Cancer biomarkers : section A of Disease markers, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Applications of molecular testing in surgical pathology of the head and neck.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2017
    Review
  8. Tyrosine kinase domain mutations ofOncoTargets and therapy · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Ali M Al-AmriDepartment of Internal Medicine, King Fahd Hospital of the University, University of Dammam, Al-Khobar, Kingdom of Saudi Arabia.
Chittibabu VatteInstitute for Research & Medical Consultation, University of Dammam, Dammam, Kingdom of Saudi Arabia.
Cyril CyrusInstitute for Research & Medical Consultation, University of Dammam, Dammam, Kingdom of Saudi Arabia.
Shahanas ChathothInstitute for Research & Medical Consultation, University of Dammam, Dammam, Kingdom of Saudi Arabia.
Tariq Mohammad HashimDepartment of Pathology, King Fahd Hospital of the University, University of Dammam, Al-Khobar, Kingdom of Saudi Arabia.
Yehia S MohamedDepartment of Microbiology, University of Dammam, Dammam, Kingdom of Saudi Arabia.
Rudaynah Al AliDepartment of Internal Medicine, King Fahd Hospital of the University, University of Dammam, Al-Khobar, Kingdom of Saudi Arabia.
Abir AlsaidDepartment of Internal Medicine, King Fahd Hospital of the University, University of Dammam, Al-Khobar, Kingdom of Saudi Arabia.
Amein Al AliInstitute for Research & Medical Consultation, University of Dammam, Dammam, Kingdom of Saudi Arabia.
Imam Abdulrahman Bin Faisal University · SAKing Fahd Hospital of the University · SA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHNSCC is the sixth most common human cancer globally. In Saudi Arabia, HNSCC accounts for seven percent of all newly diagnosed cancer cases. The PIK3CA is one of the most commonly mutated oncogene in human malignancies, including HNSCC.

objectiveThe objective of this study is to identify mutations in exon 9 and exon 20 of the PIK3CA gene among Saudi HNSCC patients, determine the frequency of these mutations and correlate with clinical and pathological findings.

methodsHistopathologically confirmed paraffin embedded HNSCC tumor tissues from 48 patients were obtained. Capillary sequencing method was used to sequence exons 9 and 20 of the PIK3CA gene. Concurrently, the expression analysis of the PIK3CA and PTEN genes were performed using real-time PCR.

resultsSixty percent of the samples studied were of pharyngeal cancer. A total of seven mutations were identified in exons 9 and 20 of the PIK3CA gene in 14 HNSCC tumor tissue specimens. The seven mutations encompassed one hot spot mutation E542K, a common mutation T1025T and the five novel mutation comprising three missense and two silent mutations. Interestingly, eight out of the 14 samples with a mutation were of patients with pharyngeal cancer.

conclusionPIK3CA gene plays a crucial role in carcinogenesis in general and HNSCC in particular. The identification of five novel mutations suggest that Saudis may have different frequencies of somatic genetic alterations that may influence HNSCC compared to other populations.

Indexed as

Genetic Predisposition to DiseaseAdolescentAdultAgedAged, 80 and overCarcinogenesisCarcinoma, Squamous CellClass I Phosphatidylinositol 3-KinasesFemaleGene FrequencyGenotypeHead and Neck NeoplasmsHumansMaleMiddle AgedMutationClass I Phosphatidylinositol 3-KinasesPhosphatidylinositol 3-KinasesPIK3CA protein, humanPTEN PhosphohydrolasePTEN protein, humangene expressionHNSCCmutationpharyngeal cancerPIK3CAPTEN

Identifiers

PMID26889984
PMCPMC13016491
OpenAlexW2252573099

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.