Evidence map›Paper›PMID 26889814›Full record

ArticleCancer biomarkers : section A of Disease markers2016

Novel SYK gene variations and changes in binding sites of miRs in breast cancer patients.

R Faryal, M Ishfaq, T Hayat, I Mahjabeen, M A Kayani

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Article in Cancer biomarkers : section A of Disease markers, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

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5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

R FaryalDepartment of Microbiology, Faculty of Biological Sciences, Quaid-i-Azam University, Islamabad, Pakistan.
M IshfaqDepartment of Biosciences, COMSATS Institute of Information Technology, Islamabad, Pakistan.
T HayatDepartment of Biosciences, COMSATS Institute of Information Technology, Islamabad, Pakistan.
I MahjabeenDepartment of Biosciences, COMSATS Institute of Information Technology, Islamabad, Pakistan.
M A KayaniDepartment of Biosciences, COMSATS Institute of Information Technology, Islamabad, Pakistan.
COMSATS University Islamabad · PKQuaid-i-Azam University · PK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSpleen Tyrosine Kinase (SYK) belongs to non-receptor tyrosine Kinase family, which normally expresses in epithelial breast tissues and acts as a tumor suppressor gene.

objectiveAnalysis of mutations in the SYK gene and deregulation of SYK transcripts by miRNA in breast cancer was studied.

methodsAll exons and exon/intron boundaries of SYK gene were amplified and sequenced in blood samples of 207 breast cancer cases and 200 matched controls using PCR-single stranded conformational polymorphism method.

resultsSequence analysis revealed 10 novel mutations in breast cancer patients. Among these 6 mutations (Ala 161Pro, His162Tyr, Phe191Tyr, Val 535Gly, Ser 556lIe and Lys536Gln) were found in exonic region and 4 (26249 T>A, 63941 G>A, 63981G>C and 86548T>A) were found in intronic region. All of these mutations are associated with ∼ 5 folds (p< 0.0001) increase in breast cancer risk in present study cohort. Regulation of SYK transcripts by miRNA was also analyzed using in silico bioinformatics tools, exon 6's mutation (Phe191Tyr) was found to have altered interaction with miR-873.

conclusionOverall novel mutations in SYK gene and in silico analysis revealed that these mutations are crucial and might be responsible for altered expression of SYK.

Indexed as

AdolescentAdultAgedBase SequenceBinding SitesBreast NeoplasmsFemaleHumansMicroRNAsMiddle AgedMutation, MissensePolymorphism, Single-Stranded ConformationalSequence AlignmentSequence Analysis, DNASyk KinaseYoung AdultMicroRNAsSyk KinaseSYK protein, humanbreast cancermicroRNAmutationsspleen tyrosine kinaseSYK gene

Identifiers

PMID26889814
PMCPMC13016505
OpenAlexW2253848357

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.