Evidence map›Paper›PMID 26888106›Full record

ArticleJournal of neurophysiology2016

Incorporating spike-rate adaptation into a rate code in mathematical and biological neurons.

Bridget N Ralston, Lucas Q Flagg, Eric Faggin, John T Birmingham

Abstract read
In one paragraph

Article in Journal of neurophysiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Information Theory and Cognition: A Review.Entropy (Basel, Switzerland) · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Bridget N RalstonDepartment of Physics, Santa Clara University, Santa Clara, California.
Lucas Q FlaggDepartment of Physics, Santa Clara University, Santa Clara, California.
Eric FagginDepartment of Physics, Santa Clara University, Santa Clara, California.
John T BirminghamDepartment of Physics, Santa Clara University, Santa Clara, California jbirmingham@scu.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

For a slowly varying stimulus, the simplest relationship between a neuron's input and output is a rate code, in which the spike rate is a unique function of the stimulus at that instant. In the case of spike-rate adaptation, there is no unique relationship between input and output, because the spike rate at any time depends both on the instantaneous stimulus and on prior spiking (the "history"). To improve the decoding of spike trains produced by neurons that show spike-rate adaptation, we developed a simple scheme that incorporates "history" into a rate code. We utilized this rate-history code successfully to decode spike trains produced by 1) mathematical models of a neuron in which the mechanism for adaptation (IAHP) is specified, and 2) the gastropyloric receptor (GPR2), a stretch-sensitive neuron in the stomatogastric nervous system of the crab Cancer borealis, that exhibits long-lasting adaptation of unknown origin. Moreover, when we modified the spike rate either mathematically in a model system or by applying neuromodulatory agents to the experimental system, we found that changes in the rate-history code could be related to the biophysical mechanisms responsible for altering the spiking.

Indexed as

Action PotentialsAdaptation, PhysiologicalModels, NeurologicalAnimalsDecapodaGanglia, InvertebrateNeuronsPylorusdecodingintegrate-and-firespike-rate adaptationstomatogastric nervous systemstretch receptor

Identifiers

PMID26888106
PMCPMC4922469

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.