Evidence map›Paper›PMID 26888063›Full record

ArticleScientific reports2016

Structural and biochemical characterization of an RNA/DNA binding motif in the N-terminal domain of RecQ4 helicases.

Francesca Marino, Aditya Mojumdar, Chiara Zucchelli, Amit Bhardwaj, Emanuele Buratti, Alessandro Vindigni, Giovanna Musco, Silvia Onesti

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
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  4. Article
  5. Molecular Mechanisms of the RECQ4 Pathogenic Mutations.Frontiers in molecular biosciences · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Francesca MarinoStructural Biology Laboratory, Elettra-Sincrotrone Trieste S.C.p.A., Trieste, Italy.
Aditya MojumdarStructural Biology Laboratory, Elettra-Sincrotrone Trieste S.C.p.A., Trieste, Italy.
Chiara ZucchelliBiomolecular NMR Unit, Division of Genetics and Cell Biology, S. Raffaele Scientific Institute, Milano, Italy.
Amit BhardwajInternational Centre for Genetic Engineering and Biotechnology (ICGEB), Trieste, Italy.
Emanuele BurattiInternational Centre for Genetic Engineering and Biotechnology (ICGEB), Trieste, Italy.
Alessandro VindigniStructural Biology Laboratory, Elettra-Sincrotrone Trieste S.C.p.A., Trieste, Italy.
Giovanna MuscoBiomolecular NMR Unit, Division of Genetics and Cell Biology, S. Raffaele Scientific Institute, Milano, Italy.
Silvia OnestiStructural Biology Laboratory, Elettra-Sincrotrone Trieste S.C.p.A., Trieste, Italy.
Elettra-Sincrotrone Trieste S.C.p.A. · ITInternational Centre for Genetic Engineering and Biotechnology · ITUniversity of Trieste · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The RecQ4 helicase belongs to the ubiquitous RecQ family but its exact role in the cell is not completely understood. In addition to the helicase domain, RecQ4 has a unique N-terminal part that is essential for viability and is constituted by a region homologous to the yeast Sld2 replication initiation factor, followed by a cysteine-rich region, predicted to fold as a Zn knuckle. We carried out a structural and biochemical analysis of both the human and Xenopus laevis RecQ4 cysteine-rich regions, and showed by NMR spectroscopy that the Xenopus fragment indeed assumes the canonical Zn knuckle fold, whereas the human sequence remains unstructured, consistent with the mutation of one of the Zn ligands. Both the human and Xenopus Zn knuckles bind to a variety of nucleic acid substrates, with a mild preference for RNA. We also investigated the effect of a segment located upstream the Zn knuckle that is highly conserved and rich in positively charged and aromatic residues, partially overlapping with the C-terminus of the Sld2-like domain. In both the human and Xenopus proteins, the presence of this region strongly enhances binding to nucleic acids. These results reveal novel possible roles of RecQ4 in DNA replication and genome stability.

Indexed as

Amino Acid MotifsAmino Acid SubstitutionAnimalsHumansMutation, MissenseNuclear Magnetic Resonance, BiomolecularProtein DomainsRecQ HelicasesXenopus laevisXenopus ProteinsRecQ HelicasesRECQL4 protein, humanXenopus Proteins

Identifiers

PMID26888063
PMCPMC4757822
OpenAlexW2415918178

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.