Evidence map›Paper›PMID 26887941›Full record

ArticleThe Journal of biological chemistry2016

Evidence That the "Lid" Domain of Nicastrin Is Not Essential for Regulating γ-Secretase Activity.

Xulun Zhang, Eric Sullivan, Maggie Scimeca, Xianzhong Wu, Yue-Ming Li, Sangram S Sisodia

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Xulun ZhangFrom the Department of Neurobiology, The University of Chicago, Chicago, Illinois 60637 and.
Eric SullivanFrom the Department of Neurobiology, The University of Chicago, Chicago, Illinois 60637 and.
Maggie ScimecaFrom the Department of Neurobiology, The University of Chicago, Chicago, Illinois 60637 and.
Xianzhong Wuthe Molecular Pharmacology and Chemistry Program, Memorial Sloan-Kettering Cancer Center, New York, New York 10065.
Yue-Ming Lithe Molecular Pharmacology and Chemistry Program, Memorial Sloan-Kettering Cancer Center, New York, New York 10065.
Sangram S SisodiaFrom the Department of Neurobiology, The University of Chicago, Chicago, Illinois 60637 and ssisodia@bsd.uchicago.edu.
University of Chicago · USMemorial Sloan Kettering Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Regulation and Function of Gamma-SecretaseR01AG026660 · NIA · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI LI, YUEMING · 2005 to 2015
$3.5M
NCI NIH HHS 5P30CA008748NCI NIH HHS P30 CA008748NIA NIH HHS R01 AG026660NIA NIH HHS R01AG026660
6 · The paper itself

Abstract

Understanding of the structure of the γ-secretase complex consisting of presenilin (PS), anterior pharynx-defective 1 (APH-1), nicastrin (NCT), and presenilin enhancer 2 (PEN-2) is of significant therapeutic interest for the design of γ-secretase modulators for Alzheimer disease. The structure of γ-secretase revealed by cryo-EM approaches suggested a substrate binding mechanism for NCT, a bilobar structure that involved rotation of the two lobes around a central pivot and opening of a "lid" region that facilitates substrate recruitment. To validate this proposal, we expressed NCT that lacks the lid entirely, or a variety of NCT variants that harbor mutations at highly conserved residues in the lid region inNCT-deficient cells, and then assessed their impact on γ-secretase assembly, activity, and stability. In addition, we assessed the impact of mutating a critical residue proposed to be a pivot around which the two lobes of NCT rotate. Our results show that neither the mutations on the lid tested here nor the entire lid deletion has any significant impact on γ-secretase assembly, activity, and stability, and that NCT with the mutation of the proposed pivot rescues γ-secretase activity inNCT-deficient cells in a manner indistinguishable from WT NCT. These findings indicate that the NCT lid is not an essential element necessary for γ-secretase assembly, activity, and stability, and that rotation of the two lobes appears not to be a prerequisite for substrate binding and γ-secretase function.

Indexed as

Amino Acid SequenceAmyloid Precursor Protein SecretasesAnimalsCell LineEndopeptidasesFibroblastsGene Expression RegulationGenetic Complementation TestHumansMembrane GlycoproteinsMembrane ProteinsMolecular Sequence DataMutagenesis, Site-DirectedMutationPeptide HydrolasesPresenilinsAmyloid Precursor Protein SecretasesAPH1A protein, humanEndopeptidasesMembrane GlycoproteinsMembrane Proteinsnicastrin proteinPeptide HydrolasesPresenilinsPSENEN protein, humanAlzheimer diseaseamyloid precursor protein (APP)gamma-secretaselidmutagenesisnicastrinNotch proteinsubstrate binding

Identifiers

PMID26887941
PMCPMC4807262
OpenAlexW2287603008

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.