Evidence map›Paper›PMID 26887643›Full record

Trial reportScientific reports2016

A Radio-genomics Approach for Identifying High Risk Estrogen Receptor-positive Breast Cancers on DCE-MRI: Preliminary Results in Predicting OncotypeDX Risk Scores.

Tao Wan, B Nicolas Bloch, Donna Plecha, CheryI L Thompson, Hannah Gilmore, Carl Jaffe, Lyndsay Harris, Anant Madabhushi

Abstract readClinical Trial
In one paragraph

Trial report in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. The impact of radiogenomics on breast cancer.American journal of cancer research · 2025
    Review
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  14. [Grading method of inhomogeneity of contrast-enhanced ultrasound for rectal tumors based on gray level co-occurrence matrix].Sheng wu yi xue gong cheng xue za zhi = Journal of biomedical engineering = Shengwu yixue gongchengxue zazhi · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Tao WanSchool of Biological Science and Medical Engineering, Beihang University, Beijing, China.
B Nicolas BlochDept. of Radiology, Boston University School of Medicine, MA, USA.
Donna PlechaDept. of Radiology, University Hospitals Case Medical Center, OH, USA.
CheryI L ThompsonDept. of Nutrition, Case Western Reserve University, OH, USA.
Hannah GilmoreDivision of Anatomic Pathology, Case Western Reserve University, OH, USA.
Carl JaffeDept. of Radiology, Boston University School of Medicine, MA, USA.
Lyndsay HarrisDivision of Hematology and Oncology, Seidman Cancer Center, OH, USA.
Anant MadabhushiDept. of Biomedical Engineering, Case Western Reserve University, OH, USA.

Funding

TUMOR METABOLISM PROGRAMP30CA043703 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI MARK R CHANCE · 1987 to 2026
$142.3M
Software to facilitate multimode, multiscale fused data for Pathology and RadioloR01CA136535 · NCI · UNIVERSITY OF PENNSYLVANIA · PI FELDMAN, MICHAEL D, MADABHUSHI, ANANT · 2009 to 2013
$3.2M
Computerized histologic image predictor of cancer outcomeR01CA202752 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI FELDMAN, MICHAEL D, GANESAN, SHRIDAR · 2016 to 2020
$3.1M
Prostate-cancer Imaging by Combined Ultrasound and Magnetic-resonance ParametersR01CA140772 · NCI · RIVERSIDE RESEARCH INSTITUTE · PI FELEPPA, ERNEST JOSEPH · 2010 to 2014
$3.0M
Comprehensive quantitative ultrafast 3D liver MRIR01DK098503 · NIDDK · CASE WESTERN RESERVE UNIVERSITY · PI GULANI, VIKAS, SEIBERLICH, NICOLE · 2013 to 2017
$2.6M
Decision support with MRI for targeting, evaluating laser ablation for prostate cR21CA167811 · NCI · RUTGERS, THE STATE UNIV OF N.J. · PI MADABHUSHI, ANANT · 2012 to 2013
$516k
Histologic image-based aggressiveness prediction in p16+ oropharyngeal carcinomaR21CA179327 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI MADABHUSHI, ANANT · 2014 to 2015
$389k
Computerized morphologic-molecular predictor of progression in DCISR21CA195152 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI BADVE, SUNIL S., MADABHUSHI, ANANT · 2015 to 2016
$388k
Decision Support System for Predicting outcome of ER+ breast cancersR43EB015199 · NIBIB · IBRIS, INC. · PI GANESAN, SHRIDAR, HARDING, DAVE · 2011 to 2011
$207k
NCI NIH HHS P30 CA043703NCI NIH HHS P30-CA043703NCI NIH HHS R01 CA136535NCI NIH HHS R01CA136535-01NCI NIH HHS R01 CA140772NCI NIH HHS R01CA140772-01NCI NIH HHS R01 CA202752NCI NIH HHS R21 CA167811NCI NIH HHS R21CA167811-01NCI NIH HHS R21 CA179327NCI NIH HHS R21 CA195152NIBIB NIH HHS R43 EB015199NIBIB NIH HHS R43EB015199-01NIDDK NIH HHS R01 DK098503NIDDK NIH HHS R01DK098503
6 · The paper itself

Abstract

To identify computer extracted imaging features for estrogen receptor (ER)-positive breast cancers on dynamic contrast enhanced (DCE)-MRI that are correlated with the low and high OncotypeDX risk categories. We collected 96 ER-positive breast lesions with low (< 18, N = 55) and high (> 30, N = 41) OncotypeDX recurrence scores. Each lesion was quantitatively characterize via 6 shape features, 3 pharmacokinetics, 4 enhancement kinetics, 4 intensity kinetics, 148 textural kinetics, 5 dynamic histogram of oriented gradient (DHoG), and 6 dynamic local binary pattern (DLBP) features. The extracted features were evaluated by a linear discriminant analysis (LDA) classifier in terms of their ability to distinguish low and high OncotypeDX risk categories. Classification performance was evaluated by area under the receiver operator characteristic curve (Az). The DHoG and DLBP achieved Az values of 0.84 and 0.80, respectively. The 6 top features identified via feature selection were subsequently combined with the LDA classifier to yield an Az of 0.87. The correlation analysis showed that DHoG (ρ = 0.85, P < 0.001) and DLBP (ρ = 0.83, P < 0.01) were significantly associated with the low and high risk classifications from the OncotypeDX assay. Our results indicated that computer extracted texture features of DCE-MRI were highly correlated with the high and low OncotypeDX risk categories for ER-positive cancers.

Indexed as

GenomicsMagnetic Resonance ImagingAdultAgedBreast NeoplasmsFemaleHumansMiddle AgedReceptors, EstrogenRisk AssessmentReceptors, Estrogen

Identifiers

PMID26887643
PMCPMC4757835

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.