Evidence map›Paper›PMID 26887344›Full record

ArticleAmerican journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons2016

Proteomic Characterization Reveals That MMP-3 Correlates With Bronchiolitis Obliterans Syndrome Following Allogeneic Hematopoietic Cell and Lung Transplantation.

X Liu, Z Yue, J Yu, E Daguindau, K Kushekhar, Q Zhang, Y Ogata, P R Gafken, Y Inamoto, A Gracon and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 40 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

X LiuDepartment of BioHealth Informatics, Indiana University School of Informatics and Computing, Indianapolis, IN.
Z YueDepartment of BioHealth Informatics, Indiana University School of Informatics and Computing, Indianapolis, IN.
J YuDepartment of Pediatrics, Indiana University School of Medicine, Indianapolis, IN.
E DaguindauDepartment of Pediatrics, Indiana University School of Medicine, Indianapolis, IN.
K KushekharDepartment of Pediatrics, Indiana University School of Medicine, Indianapolis, IN.
Q ZhangProteomics Shared Resource, Fred Hutchinson Cancer Research Center, Seattle, WA.
Y OgataProteomics Shared Resource, Fred Hutchinson Cancer Research Center, Seattle, WA.
P R GafkenProteomics Shared Resource, Fred Hutchinson Cancer Research Center, Seattle, WA.
Y InamotoClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA.
A GraconPulmonary Division, Indiana University School of Medicine, Indianapolis, IN.
D S WilkesPulmonary Division, Indiana University School of Medicine, Indianapolis, IN.
J A HansenClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA.
S J LeeClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA.
J Y ChenDepartment of BioHealth Informatics, Indiana University School of Informatics and Computing, Indianapolis, IN.
S PaczesnyDepartment of Pediatrics, Indiana University School of Medicine, Indianapolis, IN.
Indiana University – Purdue University Indianapolis · USFred Hutch Cancer Center · USIndiana University Health · USUniversity of Washington · US

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Marian Esvelt · 1985 to 2026
$296.4M
Indiana Clinical and Translational Sciences InstituteUL1TR001108 · NCATS · INDIANA UNIVERSITY INDIANAPOLIS · PI DENNE, SCOTT C., SHEKHAR, ANANTHA · 2013 to 2017
$23.3M
Improving Outcomes Assessment in Chronic GVHDR01CA118953 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI LEE, STEPHANIE J · 2011 to 2025
$8.3M
Translating Novel Drug-Targetable Biomarkers to Treat Graft versus Host DiseaseR01CA168814 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI PACZESNY, SOPHIE · 2013 to 2024
$3.0M
Biomarker Discovery in Chronic Graft-vs-Host DiseaseR01HL094260 · NHLBI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HANSEN, JOHN ANDREW · 2008 to 2011
$1.8M
NCATS NIH HHS UL1 TR001108NCI NIH HHS P30 CA015704NCI NIH HHS R01 CA118953NCI NIH HHS R01 CA168814NHLBI NIH HHS R01 HL094260
6 · The paper itself

Abstract

Improved diagnostic methods are needed for bronchiolitis obliterans syndrome (BOS), a serious complication after allogeneic hematopoietic cell transplantation (HCT) and lung transplantation. For protein candidate discovery, we compared plasma pools from HCT transplantation recipients with BOS at onset (n = 12), pulmonary infection (n = 16), chronic graft-versus-host disease without pulmonary involvement (n = 15) and no chronic complications after HCT (n = 15). Pools were labeled with different tags (isobaric tags for relative and absolute quantification), and two software tools identified differentially expressed proteins (≥1.5-fold change). Candidate proteins were further selected using a six-step computational biology approach. The diagnostic value of the lead candidate, matrix metalloproteinase 3 (MMP3), was evaluated by enzyme-linked immunosorbent assay in plasma of a verification cohort (n = 112) with and without BOS following HCT (n = 76) or lung transplantation (n = 36). MMP3 plasma concentrations differed significantly between patients with and without BOS (area under the receiver operating characteristic curve 0.77). Consequently, MMP3 represents a potential noninvasive blood test for diagnosis of BOS.

Indexed as

AdultAgedBiomarkersBronchiolitis ObliteransEnzyme-Linked Immunosorbent AssayFemaleFollow-Up StudiesGraft vs Host DiseaseHematopoietic Stem Cell TransplantationHumansLung TransplantationMaleMatrix Metalloproteinase 3Middle AgedPrognosisProteomeBiomarkersMatrix Metalloproteinase 3MMP3 protein, humanProteomebasic (laboratory) research/sciencebiomarkerbone marrow/hematopoietic stem cell transplantationbronchiolitis obliterans (BOS)lung transplantation/pulmonologytranslational research/science

Identifiers

PMID26887344
PMCPMC4956556
OpenAlexW2283818820

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.