Evidence map›Paper›PMID 26886941›Full record

ArticleMammalian genome : official journal of the International Mammalian Genome Society2016

A large insertion in intron 2 of the TYRP1 gene associated with American Palomino phenotype in American mink.

Susanna Cirera, Marios Nektarios Markakis, Thea Kristiansen, Kris Vissenberg, Merete Fredholm, Knud Christensen, Razvan Anistoroaei

Abstract read
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In one paragraph

Article in Mammalian genome : official journal of the International Mammalian Genome Society, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. The Genetic Diversity of Mink (Animals : an open access journal from MDPI · 2023
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Analysis ofAnimals : an open access journal from MDPI · 2021
    Article
  9. Article
  10. Article
  11. Frontiers in genetics · 2019
    Article
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Susanna CireraDepartment of Veterinary Clinical and Animal Sciences, Section of Genetics, Bioinformatics and Animal Breeding, Faculty of Health and Medical Sciences, University of Copenhagen, Groennegaardsvej 3, 1870, Frederiksberg C, Denmark.
Marios Nektarios MarkakisDepartment of Veterinary Clinical and Animal Sciences, Section of Genetics, Bioinformatics and Animal Breeding, Faculty of Health and Medical Sciences, University of Copenhagen, Groennegaardsvej 3, 1870, Frederiksberg C, Denmark.
Thea KristiansenDepartment of Veterinary Clinical and Animal Sciences, Section of Genetics, Bioinformatics and Animal Breeding, Faculty of Health and Medical Sciences, University of Copenhagen, Groennegaardsvej 3, 1870, Frederiksberg C, Denmark.
Kris VissenbergDepartment of Biology, Integrated Molecular Plant Physiology Research, University of Antwerp, 2020, Antwerp, Belgium.
Merete FredholmDepartment of Veterinary Clinical and Animal Sciences, Section of Genetics, Bioinformatics and Animal Breeding, Faculty of Health and Medical Sciences, University of Copenhagen, Groennegaardsvej 3, 1870, Frederiksberg C, Denmark.
Knud ChristensenDepartment of Veterinary Clinical and Animal Sciences, Section of Genetics, Bioinformatics and Animal Breeding, Faculty of Health and Medical Sciences, University of Copenhagen, Groennegaardsvej 3, 1870, Frederiksberg C, Denmark.
Razvan AnistoroaeiDepartment of Veterinary Clinical and Animal Sciences, Section of Genetics, Bioinformatics and Animal Breeding, Faculty of Health and Medical Sciences, University of Copenhagen, Groennegaardsvej 3, 1870, Frederiksberg C, Denmark. ran@sund.ku.dk.
University of Copenhagen · DKUniversity of Antwerp · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A number of American mink phenotypes display a range of brownish colours. One of these phenotypes, namely American Palomino (b (P) b (P) ) (AP) has been found to be associated with the tyrosinase-related protein 1 (TYRP1) gene by genotyping microsatellite markers in one sire family. Trials for amplifying the genomic DNA and cDNA at the beginning of intron 2 of AP TYRP1 revealed the presence of a large insertion of approximately eight kb. The insertion most likely disrupts different elements necessary for the splicing of intron 2 of the TYRP1 gene. In AP RNAseq data indicate, however, the presence of the wild-type (wt) transcript at very low levels and Western blot reveals three products when using an antibody raised against middle part of the TYRP1 protein. One individual from another brown mink phenotype-commercially named Dawn-was also investigated at the molecular level by long-range PCR and the same size insertion appears to be present. By this we suggest that certain modifiers of TYRP1 would induce different brown colour degradation, which results in at least two different phases of brown.

Indexed as

IntronsMutagenesis, InsertionalPhenotypeAnimalsExonsGenetic LociGenetic MarkersGenotypeHigh-Throughput Nucleotide SequencingMinkOxidoreductasesGenetic MarkersOxidoreductasestyrosinase-related protein-1

Identifiers

PMID26886941
OpenAlexW2275412842

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.