Evidence map›Paper›PMID 26886551›Full record

ArticlePloS one2016

Mathematical Model of the Firefly Luciferase Complementation Assay Reveals a Non-Linear Relationship between the Detected Luminescence and the Affinity of the Protein Pair Being Analyzed.

Renee Dale, Yuki Ohmuro-Matsuyama, Hiroshi Ueda, Naohiro Kato

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Renee DaleDepartment of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana, United States of America.
Yuki Ohmuro-MatsuyamaChemical Resources Laboratory, Tokyo Institute of Technology, Nagatsuta-cho, Yokohama, Kanagawa, Japan.
Hiroshi UedaChemical Resources Laboratory, Tokyo Institute of Technology, Nagatsuta-cho, Yokohama, Kanagawa, Japan.
Naohiro KatoDepartment of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana, United States of America.
Louisiana State University · USTokyo Institute of Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The firefly luciferase complementation assay is widely used as a bioluminescent reporter technology to detect protein-protein interactions in vitro, in cellulo, and in vivo. Upon the interaction of a protein pair, complemented firefly luciferase emits light through the adenylation and oxidation of its substrate, luciferin. Although it has been suggested that kinetics of light production in the firefly luciferase complementation assay is different from that in full length luciferase, the mechanism behind this is still not understood. To quantitatively understand the different kinetics and how changes in affinity of a protein pair affect the light emission in the assay, a mathematical model of the in vitro firefly luciferase complementation assay was constructed. Analysis of the model finds that the change in kinetics is caused by rapid dissociation of the protein pair, low adenylation rate of luciferin, and increased affinity of adenylated luciferin to the enzyme. The model suggests that the affinity of the protein pair has an exponential relationship with the light detected in the assay. This relationship causes the change of affinity in a protein pair to be underestimated. This study underlines the importance of understanding the molecular mechanism of the firefly luciferase complementation assay in order to analyze protein pair affinities quantitatively.

Indexed as

LuminescenceAdenosine MonophosphateBiological AssayComputer SimulationInhibitory Concentration 50KineticsLuciferases, FireflyModels, TheoreticalProtein Structure, TertiaryProto-Oncogene Proteins c-mdm2Reproducibility of ResultsTumor Suppressor Protein p53Adenosine MonophosphateLuciferases, FireflyProto-Oncogene Proteins c-mdm2Tumor Suppressor Protein p53

Identifiers

PMID26886551
PMCPMC4757408
OpenAlexW2283931935

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.