Evidence map›Paper›PMID 26884462›Full record

ArticleMolecular and cellular biology2016

Histone Chaperone Nap1 Is a Major Regulator of Histone H2A-H2B Dynamics at the Inducible GAL Locus.

Xu Chen, Sheena D'Arcy, Catherine A Radebaugh, Daniel D Krzizike, Holli A Giebler, Liangquan Huang, Jennifer K Nyborg, Karolin Luger, Laurie A Stargell

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Expression ofMolecular therapy. Nucleic acids · 2023
    Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. NAP1-Related Protein 1 (NRP1) has multiple interaction modes for chaperoning histones H2A-H2B.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Yeast HMO1: Linker Histone Reinvented.Microbiology and molecular biology reviews : MMBR · 2017
    Review
  17. Histone chaperone networks shaping chromatin function.Nature reviews. Molecular cell biology · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Xu ChenDepartment of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, Colorado, USA.
Sheena D'ArcyDepartment of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, Colorado, USA Howard Hughes Medical Institute, Colorado State University, Fort Collins, Colorado, USA.
Catherine A RadebaughDepartment of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, Colorado, USA.
Daniel D KrzizikeDepartment of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, Colorado, USA Howard Hughes Medical Institute, Colorado State University, Fort Collins, Colorado, USA.
Holli A GieblerDepartment of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, Colorado, USA.
Liangquan HuangDepartment of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, Colorado, USA.
Jennifer K NyborgDepartment of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, Colorado, USA.
Karolin LugerDepartment of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, Colorado, USA Howard Hughes Medical Institute, Colorado State University, Fort Collins, Colorado, USA Institute for Genome Architecture and Function, Colorado State University, Fort Collins, Colorado, USA.
Laurie A StargellDepartment of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, Colorado, USA Institute for Genome Architecture and Function, Colorado State University, Fort Collins, Colorado, USA Laurie.Stargell@colostate.edu.
Colorado State University · USHoward Hughes Medical Institute · US

Funding

project 3P01GM088409 · NIGMS · COLORADO STATE UNIVERSITY · PI NYBORG, JENNIFER K. · 2010 to 2014
$7.3M
Structure and Function of Nucleosome Assembly Protein 1R01GM067777 · NIGMS · UNIVERSITY OF COLORADO · PI LUGER, KAROLIN · 2003 to 2015
$3.7M
Howard Hughes Medical InstituteNIGMS NIH HHS P01 GM088409NIGMS NIH HHS R01 GM067777
6 · The paper itself

Abstract

Histone chaperones, like nucleosome assembly protein 1 (Nap1), play a critical role in the maintenance of chromatin architecture. Here, we use the GAL locus in Saccharomyces cerevisiae to investigate the influence of Nap1 on chromatin structure and histone dynamics during distinct transcriptional states. When the GAL locus is not expressed, cells lacking Nap1 show an accumulation of histone H2A-H2B but not histone H3-H4 at this locus. Excess H2A-H2B interacts with the linker DNA between nucleosomes, and the interaction is independent of the inherent DNA-binding affinity of H2A-H2B for these particular sequences as measured in vitro When the GAL locus is transcribed, excess H2A-H2B is reversed, and levels of all chromatin-bound histones are depleted in cells lacking Nap1. We developed an in vivo system to measure histone exchange at the GAL locus and observed considerable variability in the rate of exchange across the locus in wild-type cells. We recapitulate this variability with in vitro nucleosome reconstitutions, which suggests a contribution of DNA sequence to histone dynamics. We also find that Nap1 is required for transcription-dependent H2A-H2B exchange. Altogether, these results indicate that Nap1 is essential for maintaining proper chromatin composition and modulating the exchange of H2A-H2B in vivo.

Indexed as

Genetic LociChromatinGalactokinaseGene DeletionGene Expression Regulation, FungalHistonesMultigene FamilyNucleosome Assembly Protein 1Saccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTrans-ActivatorsTranscription, GeneticChromatinGAL10 protein, S cerevisiaeGAL1 protein, S cerevisiaeGalactokinaseHistonesHtz1 protein, S cerevisiaeNAP1 protein, S cerevisiaeNucleosome Assembly Protein 1Saccharomyces cerevisiae ProteinsTrans-Activators

Identifiers

PMID26884462
PMCPMC4836277
OpenAlexW2282401878

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.