Evidence map›Paper›PMID 26884459›Full record

ArticlePhysiological genomics2016

Gene expression profiling of the effects of organic dust in lung epithelial and THP-1 cells reveals inductive effects on inflammatory and immune response genes.

Vijay Boggaram, David S Loose, Koteswara R Gottipati, Kartiga Natarajan, Courtney T Mitchell

Open access · bronzeAbstract read
In one paragraph

Article in Physiological genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it, 19 citations in OpenAlex.

  1. Pooled it
  2. Article
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  5. Article
  6. Bacterial extracellular vesicles isolated from organic dust induce neutrophilic inflammation in the lung.American journal of physiology. Lung cellular and molecular physiology · 2020
    Article
  7. Organic dust induces inflammatory gene expression in lung epithelial cells via ROS-dependent STAT-3 activation.American journal of physiology. Lung cellular and molecular physiology · 2019
    Article
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Vijay BoggaramDepartment of Cellular and Molecular Biology, University of Texas Health Science Center at Tyler, Tyler, Texas; and vijay.boggaram@uthct.edu.
David S LooseDepartment of Integrative Biology and Pharmacology, University of Texas Health Science Center at Houston, Houston, Texas.
Koteswara R GottipatiDepartment of Cellular and Molecular Biology, University of Texas Health Science Center at Tyler, Tyler, Texas; and.
Kartiga NatarajanDepartment of Cellular and Molecular Biology, University of Texas Health Science Center at Tyler, Tyler, Texas; and.
Courtney T MitchellDepartment of Cellular and Molecular Biology, University of Texas Health Science Center at Tyler, Tyler, Texas; and.
The University of Texas Health Science Center at Tyler · USThe University of Texas Health Science Center at Houston · US

Funding

Southwest Center for Agricultural Health, Injury Prevention, and Education (Diversity)U54OH007541 · OH · UNIVERSITY OF TEXAS HLTH CTR AT TYLER · PI CASANOVA, VANESSA · 2011 to 2025
$19.6M
NIOSH CDC HHS U50 OH007541NIOSH CDC HHS U54 OH007541
6 · The paper itself

Abstract

The intensification and concentration of animal production operations expose workers to high levels of organic dusts in the work environment. Exposure to organic dusts is a risk factor for the development of acute and chronic respiratory symptoms and diseases. Lung epithelium plays important roles in the control of immune and inflammatory responses to environmental agents to maintain lung health. To better understand the effects of organic dust on lung inflammatory responses, we characterized the gene expression profiles of A549 alveolar and Beas2B bronchial epithelial and THP-1 monocytic cells influenced by exposure to poultry dust extract by DNA microarray analysis using Illumina Human HT-12 v4 Expression BeadChip. We found that A549 alveolar and Beas2B bronchial epithelial and THP-1 cells responded with unique changes in the gene expression profiles with regulation of genes encoding inflammatory cytokines, chemokines, and other inflammatory proteins being common to all the three cells. Significantly induced genes included IL-8, IL-6, IL-1β, ICAM-1, CCL2, CCL5, TLR4, and PTGS2. Validation by real-time qRT-PCR, ELISA, Western immunoblotting, and immunohistochemical staining of lung sections from mice exposed to dust extract validated DNA microarray results. Pathway analysis indicated that dust extract induced changes in gene expression influenced functions related to cellular growth and proliferation, cell death and survival, and cellular development. These data show that a broad range of inflammatory mediators produced in response to poultry dust exposure can modulate lung immune and inflammatory responses. This is the first report on organic dust induced changes in expression profiles in lung epithelial and THP-1 monocytic cells.

Indexed as

DustAnimalsChemokinesCytokinesEpithelial CellsFemaleGene Expression ProfilingHumansInflammation MediatorsLungMice, Inbred C57BLPneumoniaPoultryChemokinesCytokinesDustInflammation Mediatorscytokinesdust exposureinflammationlung epitheliumoccupational lung diseases

Identifiers

PMID26884459
PMCPMC4824153
OpenAlexW2330871660

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.