Evidence map›Paper›PMID 26884333›Full record

ArticleThe Journal of biological chemistry2016

Identification of a Substrate Recognition Domain in the Replication Stress Response Protein Zinc Finger Ran-binding Domain-containing Protein 3 (ZRANB3).

Akosua Badu-Nkansah, Aaron C Mason, Brandt F Eichman, David Cortez

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 27 citations in OpenAlex.

  1. The Zinc Finger Ran-Binding Protein 3 (ZRANB3): An Advanced Perspective.International journal of molecular sciences · 2026
    Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Review
  8. Replication-Coupled DNA Repair.Molecular cell · 2019
    Review
  9. Review
  10. Review
  11. Article
  12. Review
  13. Functions of SMARCAL1, ZRANB3, and HLTF in maintaining genome stability.Critical reviews in biochemistry and molecular biology · 2017
    Review
  14. Article
  15. Review
  16. Review
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Akosua Badu-NkansahFrom the Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee 37232 and.
Aaron C MasonDepartment of Biological Sciences, Vanderbilt University College of Arts and Sciences, Nashville, Tennessee 37232.
Brandt F EichmanFrom the Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee 37232 and Department of Biological Sciences, Vanderbilt University College of Arts and Sciences, Nashville, Tennessee 37232.
David CortezFrom the Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee 37232 and david.cortez@vanderbilt.edu.
Vanderbilt University · US

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI John A. Tainer · 2001 to 2026
$89.6M
BIOCHEMICAL &CHEMICAL TRAINING FOR CANCER RESEARCHT32CA009582 · NCI · VANDERBILT UNIVERSITY · PI David K Cortez · 1987 to 2026
$8.8M
Analysis of the Replication Stress ResponseR01GM116616 · NIGMS · VANDERBILT UNIVERSITY · PI David K Cortez · 2015 to 2026
$5.4M
Function of the ATR-ATRIP ComplexR01CA102729 · NCI · VANDERBILT UNIVERSITY · PI CORTEZ, DAVID K · 2003 to 2018
$4.2M
SMARCAL1 function in replication stress and diseaseR01CA160432 · NCI · VANDERBILT UNIVERSITY · PI CORTEZ, DAVID K, EISCHEN, CHRISTINE M. · 2012 to 2016
$2.3M
Mechanisms of replication fork repairR01GM117299 · NIGMS · VANDERBILT UNIVERSITY · PI EICHMAN, BRANDT F · 2016 to 2019
$1.2M
NCI NIH HHS P01 CA092584NCI NIH HHS P01CA092584NCI NIH HHS R01 CA102729NCI NIH HHS R01CA102729-11A1S1NCI NIH HHS R01 CA160432NCI NIH HHS R01CA160432NCI NIH HHS T32 CA009582NIGMS NIH HHS R01 GM116616NIGMS NIH HHS R01 GM117299
6 · The paper itself

Abstract

DNA damage and other forms of replication stress can cause replication forks to stall. Replication stress response proteins stabilize and resolve stalled forks by mechanisms that include fork remodeling to facilitate repair or bypass of damaged templates. Several enzymes including SMARCAL1, HLTF, and ZRANB3 catalyze these reactions. SMARCAL1 and HLTF utilize structurally distinct accessory domains attached to an ATPase motor domain to facilitate DNA binding and catalysis of fork remodeling reactions. Here we describe a substrate recognition domain within ZRANB3 that is needed for it to recognize forked DNA structures, hydrolyze ATP, catalyze fork remodeling, and act as a structure-specific endonuclease. Thus, substrate recognition domains are a common feature of fork remodeling, SNF2-family, DNA-dependent ATPases, and our study provides further mechanistic understanding of how these enzymes maintain genome integrity during DNA replication.

Indexed as

Adenosine TriphosphateAmino Acid SequenceAnimalsDNADNA DamageDNA HelicasesDNA RepairHEK293 CellsHumansMiceMolecular Sequence DataProtein Structure, TertiarySequence AlignmentAdenosine TriphosphateDNADNA HelicasesZRANB3 protein, humanDNADNA-binding proteinDNA damage responseDNA repairDNA replicationendonucleaseprotein domain

Identifiers

PMID26884333
PMCPMC5414104
OpenAlexW2280398256

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.