Evidence map›Paper›PMID 26884197›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Conserved properties of individual Ca2+-binding sites in calmodulin.

D Brent Halling, Benjamin J Liebeskind, Amelia W Hall, Richard W Aldrich

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed, 1 pooled it
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 1 synthesis or guideline pooled it, 116 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Redesign of Calmodulin for Genetically Encoded ZnChemical & biomedical imaging · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Structural insights into the dual CaNature communications · 2025
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Interaction of Calmodulin with TRPM: An Initiator of Channel Modulation.International journal of molecular sciences · 2023
    Review

10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

D Brent HallingDepartment of Neuroscience, University of Texas at Austin, Austin, TX 78712;
Benjamin J LiebeskindDepartment of Neuroscience, University of Texas at Austin, Austin, TX 78712; Center for Systems and Synthetic Biology, University of Texas at Austin, Austin, TX 78712;
Amelia W HallCenter for Systems and Synthetic Biology, University of Texas at Austin, Austin, TX 78712; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712.
Richard W AldrichDepartment of Neuroscience, University of Texas at Austin, Austin, TX 78712; raldrich@austin.utexas.edu.
The University of Texas at Austin · US

Funding

Mechanisms of Calcium-Calmodulin Mediated Ion Channel GatingR01NS077821 · NINDS · UNIVERSITY OF TEXAS AT AUSTIN · PI ALDRICH, RICHARD · 2011 to 2021
$4.7M
Evolutionary Biophysics of Slo3 Potassium ChannelsF32GM112504 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI LIEBESKIND, BENJAMIN J · 2015 to 2017
$163k
State Dependent Affinity of Calmodulin for SK2F32GM093626 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI HALLING, DAVID BRENT · 2011 to 2012
$81k
NIGMS NIH HHS F32 GM093626NIGMS NIH HHS F32 GM112504NINDS NIH HHS NS077821NINDS NIH HHS R01 NS077821
6 · The paper itself

Abstract

Calmodulin (CaM) is a Ca(2+)-sensing protein that is highly conserved and ubiquitous in eukaryotes. In humans it is a locus of life-threatening cardiomyopathies. The primary function of CaM is to transduce Ca(2+) concentration into cellular signals by binding to a wide range of target proteins in a Ca(2+)-dependent manner. We do not fully understand how CaM performs its role as a high-fidelity signal transducer for more than 300 target proteins, but diversity among its four Ca(2+)-binding sites, called EF-hands, may contribute to CaM's functional versatility. We therefore looked at the conservation of CaM sequences over deep evolutionary time, focusing primarily on the four EF-hand motifs. Expanding on previous work, we found that CaM evolves slowly but that its evolutionary rate is substantially faster in fungi. We also found that the four EF-hands have distinguishing biophysical and structural properties that span eukaryotes. These results suggest that all eukaryotes require CaM to decode Ca(2+) signals using four specialized EF-hands, each with specific, conserved traits. In addition, we provide an extensive map of sites associated with target proteins and with human disease and correlate these with evolutionary sequence diversity. Our comprehensive evolutionary analysis provides a basis for understanding the sequence space associated with CaM function and should help guide future work on the relationship between structure, function, and disease.

Indexed as

Amino Acid SequenceBinding SitesCalciumCalmodulinModels, MolecularMolecular Sequence DataSequence Homology, Amino AcidCalciumCalmodulincalcium signalingEF-handevolutionproteinstructure

Identifiers

PMID26884197
PMCPMC4780646
OpenAlexW2284222372

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.