Evidence map›Paper›PMID 26884191›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Mechanism of a cytosolic O-glycosyltransferase essential for the synthesis of a bacterial adhesion protein.

Yu Chen, Ravin Seepersaud, Barbara A Bensing, Paul M Sullam, Tom A Rapoport

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 36 citations in OpenAlex.

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  19. Carb loading takes proteins on a ride.The Journal of biological chemistry · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Yu ChenHoward Hughes Medical Institute, Harvard Medical School, Boston, MA 02115; Department of Cell Biology, Harvard Medical School, Boston, MA 02115;
Ravin SeepersaudSan Francisco Veteran Affairs Medical Center, San Francisco, CA 94121; University of California, San Francisco, CA 94121.
Barbara A BensingSan Francisco Veteran Affairs Medical Center, San Francisco, CA 94121; University of California, San Francisco, CA 94121.
Paul M SullamSan Francisco Veteran Affairs Medical Center, San Francisco, CA 94121; University of California, San Francisco, CA 94121 tom_rapoport@hms.harvard.edu paul.sullam@ucsf.edu.
Tom A RapoportHoward Hughes Medical Institute, Harvard Medical School, Boston, MA 02115; Department of Cell Biology, Harvard Medical School, Boston, MA 02115; tom_rapoport@hms.harvard.edu paul.sullam@ucsf.edu.
University of California, San Francisco · USHarvard University · USHoward Hughes Medical Institute · USSan Francisco VA Medical Center · US

Funding

Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
PROTEIN TRANSPORT INTO MAMMALIAN ENDOPLASMIC RETICULUMR01GM052586 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI Tom A Rapoport · 1995 to 2026
$11.9M
STREPTOCOCCAL PLATELET BINDING AND ENDOCARDITISR01AI041513 · NIAID · NORTHERN CALIFORNIA INSTITUTE RES &EDUC · PI SULLAM, PAUL M. · 1997 to 2019
$5.6M
Mechanisms for ligand binding by serine-rich adhesins of Gram-positive pathogensR01AI106987 · NIAID · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI IVERSON, T M, SULLAM, PAUL M. · 2014 to 2018
$3.4M
The accessory Sec system of Gram-positive pathogensI01BX001653 · VA · VETERANS AFFAIRS MED CTR SAN FRANCISCO · PI SULLAM, PAUL M. · 2013 to 2016
–
BLRD VA I01 BX001653NIAID NIH HHS R01 AI041513NIAID NIH HHS R01-AI041513NIAID NIH HHS R01 AI106987NIAID NIH HHS R01-AI106987NIGMS NIH HHS GM052586NIGMS NIH HHS P41 GM103403NIGMS NIH HHS R01 GM052586
6 · The paper itself

Abstract

O-glycosylation of Ser and Thr residues is an important process in all organisms, which is only poorly understood. Such modification is required for the export and function of adhesin proteins that mediate the attachment of pathogenic Gram-positive bacteria to host cells. Here, we have analyzed the mechanism by which the cytosolic O-glycosyltransferase GtfA/B of Streptococcus gordonii modifies the Ser/Thr-rich repeats of adhesin. The enzyme is a tetramer containing two molecules each of GtfA and GtfB. The two subunits have the same fold, but only GtfA contains an active site, whereas GtfB provides the primary binding site for adhesin. During a first phase of glycosylation, the conformation of GtfB is restrained by GtfA to bind substrate with unmodified Ser/Thr residues. In a slow second phase, GtfB recognizes residues that are already modified with N-acetylglucosamine, likely by converting into a relaxed conformation in which one interface with GtfA is broken. These results explain how the glycosyltransferase modifies a progressively changing substrate molecule.

Indexed as

Bacterial AdhesionBacterial ProteinsCrystallography, X-RayCytosolDimerizationGlycosyltransferasesGram-Positive BacteriaModels, MolecularProtein ConformationBacterial ProteinsGlycosyltransferasesbacterial adhesincrystal structureenzymatic mechanismO-glycosylationSer/Thr-rich repeats

Identifiers

PMID26884191
PMCPMC4780648
OpenAlexW2276948708

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.