Evidence map›Paper›PMID 26884185›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Truncating PREX2 mutations activate its GEF activity and alter gene expression regulation in NRAS-mutant melanoma.

Yonathan Lissanu Deribe, Yanxia Shi, Kunal Rai, Luigi Nezi, Samir B Amin, Chia-Chin Wu, Kadir C Akdemir, Mozhdeh Mahdavi, Qian Peng, Qing Edward Chang and 5 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Proteomics in pancreatic cancer.Biomarker research · 2025
    Review
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  7. Article
  8. Review
  9. Tumorigenesis driven by the BRAFbioRxiv : the preprint server for biology · 2024
    Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Targeting Rac and Cdc42 GEFs in Metastatic Cancer.Frontiers in cell and developmental biology · 2020
    Review
  16. Rac-GEF/Rac Signaling and Metastatic Dissemination in Lung Cancer.Frontiers in cell and developmental biology · 2020
    Article
  17. RAC1Cancer cell · 2019
    Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 4 countries.

Yonathan Lissanu DeribeDepartment of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX 77030; ylissanu@mdanderson.org lchin@mdanderson.org.
Yanxia ShiDepartment of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX 77030; Sun Yat-Sen University Cancer Center, State Key Laboratory of Oncology in South China, Collaborate Center for Cancer Medicine, Guangzhou 510060, China;
Kunal RaiDepartment of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX 77030;
Luigi NeziDepartment of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX 77030;
Samir B AminDepartment of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX 77030;
Chia-Chin WuDepartment of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX 77030;
Kadir C AkdemirDepartment of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX 77030;
Mozhdeh MahdaviDepartment of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX 77030;
Qian PengDepartment of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX 77030;
Qing Edward ChangInstitute for Applied Cancer Science (IACS), The University of Texas MD Anderson Cancer Center, Houston, TX 77030;
Kirsti HornigoldThe Babraham Institute, Babraham Research Campus, Cambridge CB22 3AT, United Kingdom;
Stefan T AroldDivision of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, 23955-6900 Saudi Arabia;
Heidi C E WelchThe Babraham Institute, Babraham Research Campus, Cambridge CB22 3AT, United Kingdom;
Levi A GarrawayDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215; Broad Institute of MIT and Harvard, Boston, MA 02141.
Lynda ChinDepartment of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX 77030; Institute for Applied Cancer Science (IACS), The University of Texas MD Anderson Cancer Center, Houston, TX 77030; ylissanu@mdanderson.org lchin@mdanderson.org.
The University of Texas MD Anderson Cancer Center · USBabraham Institute · GBBroad Institute · USKing Abdullah University of Science and Technology · SASun Yat-sen University Cancer Center · CN

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
Biotechnology and Biological Sciences Research Council BBS/E/B/000C0411Medical Research Council G120/825NCI NIH HHS P30 CA016672
6 · The paper itself

Abstract

PREX2 (phosphatidylinositol-3,4,5-triphosphate-dependent Rac-exchange factor 2) is a PTEN (phosphatase and tensin homolog deleted on chromosome 10) binding protein that is significantly mutated in cutaneous melanoma and pancreatic ductal adenocarcinoma. Here, genetic and biochemical analyses were conducted to elucidate the nature and mechanistic basis of PREX2 mutation in melanoma development. By generating an inducible transgenic mouse model we showed an oncogenic role for a truncating PREX2 mutation (PREX2(E824)*) in vivo in the context of mutant NRAS. Using integrative cross-species gene expression analysis, we identified deregulated cell cycle and cytoskeleton organization as significantly perturbed biological pathways in PREX2 mutant tumors. Mechanistically, truncation of PREX2 activated its Rac1 guanine nucleotide exchange factor activity, abolished binding to PTEN and activated the PI3K (phosphatidyl inositol 3 kinase)/Akt signaling pathway. We further showed that PREX2 truncating mutations or PTEN deletion induces down-regulation of the tumor suppressor and cell cycle regulator CDKN1C (also known as p57(KIP2)). This down-regulation occurs, at least partially, through DNA hypomethylation of a differentially methylated region in chromosome 11 that is a known regulatory region for expression of the CDKN1C gene. Together, these findings identify PREX2 as a mediator of NRAS-mutant melanoma development that acts through the PI3K/PTEN/Akt pathway to regulate gene expression of a cell cycle regulator.

Indexed as

MutationAnimalsGuanine Nucleotide Exchange FactorsHumansMelanoma, ExperimentalMicePhosphatidylinositol 3-KinasesProto-Oncogene Proteins c-aktSignal TransductionGuanine Nucleotide Exchange FactorsPhosphatidylinositol 3-KinasesPREX2 protein, humanProto-Oncogene Proteins c-aktmelanomamouse models of cancerPI3K/AktPREX2Rac1

Identifiers

PMID26884185
PMCPMC4780599
OpenAlexW2274787882

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.