Evidence map›Paper›PMID 26884161›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

A virus of hyperthermophilic archaea with a unique architecture among DNA viruses.

Elena Ilka Rensen, Tomohiro Mochizuki, Emmanuelle Quemin, Stefan Schouten, Mart Krupovic, David Prangishvili

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
5.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Journal of virology · 2021
    Article
  6. Review
  7. Structures of filamentous viruses infecting hyperthermophilic archaea explain DNA stabilization in extreme environments.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  8. Article
  9. Article
  10. Article
  11. Spindle-shaped viruses infect marine ammonia-oxidizing thaumarchaea.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  12. Article
  13. ICTV Virus Taxonomy Profile: Tristromaviridae.The Journal of general virology · 2019
    Article
  14. Biotechnology of extremely thermophilic archaea.FEMS microbiology reviews · 2018
    Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. The enigmatic archaeal virosphere.Nature reviews. Microbiology · 2017
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Elena Ilka RensenDepartment of Microbiology, Institut Pasteur, 75015 Paris, France;
Tomohiro MochizukiDepartment of Microbiology, Institut Pasteur, 75015 Paris, France; Earth-Life Science Institute, Tokyo Institute of Technology, Tokyo 152-8550, Japan;
Emmanuelle QueminDepartment of Microbiology, Institut Pasteur, 75015 Paris, France;
Stefan SchoutenDepartment of Marine Organic Biogeochemistry, Royal Netherlands Institute for Sea Research, 1790 AB Den Burg, The Netherlands.
Mart KrupovicDepartment of Microbiology, Institut Pasteur, 75015 Paris, France; krupovic@pasteur.fr david.prangishvili@pasteur.fr.
David PrangishviliDepartment of Microbiology, Institut Pasteur, 75015 Paris, France; krupovic@pasteur.fr david.prangishvili@pasteur.fr.
Institut Pasteur · FRRoyal Netherlands Institute for Sea Research · NLTokyo Institute of Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Viruses package their genetic material in diverse ways. Most known strategies include encapsulation of nucleic acids into spherical or filamentous virions with icosahedral or helical symmetry, respectively. Filamentous viruses with dsDNA genomes are currently associated exclusively with Archaea. Here, we describe a filamentous hyperthermophilic archaeal virus, Pyrobaculum filamentous virus 1 (PFV1), with a type of virion organization not previously observed in DNA viruses. The PFV1 virion, 400 ± 20 × 32 ± 3 nm, contains an envelope and an inner core consisting of two structural units: a rod-shaped helical nucleocapsid formed of two 14-kDa major virion proteins and a nucleocapsid-encompassing protein sheath composed of a single major virion protein of 18 kDa. The virion organization of PFV1 is superficially similar to that of negative-sense RNA viruses of the family Filoviridae, including Ebola virus and Marburg virus. The linear dsDNA of PFV1 carries 17,714 bp, including 60-bp-long terminal inverted repeats, and contains 39 predicted ORFs, most of which do not show similarities to sequences in public databases. PFV1 is a lytic virus that completely disrupts the host cell membrane at the end of the infection cycle.

Indexed as

ArchaeaDNA VirusesGenome, ViralHost-Pathogen InteractionsMicroscopy, Electron, Transmissionfilamentous viruseshyperthermophilic archaeavirion organization

Identifiers

PMID26884161
PMCPMC4780613
OpenAlexW2277506270

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.