Evidence map›Paper›PMID 26883548›Full record

ArticleNature communications2016

Deciphering the importance of the palindromic architecture of the immunoglobulin heavy-chain 3' regulatory region.

Alexis Saintamand, Christelle Vincent-Fabert, Armand Garot, Pauline Rouaud, Zeliha Oruc, Virginie Magnone, Michel Cogné, Yves Denizot

Abstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Article
  2. Review
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  9. Article
  10. Review
  11. Article
  12. Physiological role of the 3'IgH CBEs super-anchor in antibody class switching.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  13. Review
  14. Article
  15. Mouse Models ofFrontiers in immunology · 2020
    Review
  16. Article
  17. 3'RR and 5'ECellular & molecular immunology · 2019
    Article
  18. Article
  19. 3'Oncotarget · 2018
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Alexis SaintamandUniversité de Limoges, CRIBL, UMR CNRS 7276, Limoges 87025, France.
Christelle Vincent-FabertUniversité de Limoges, CRIBL, UMR CNRS 7276, Limoges 87025, France.
Armand GarotUniversité de Limoges, CRIBL, UMR CNRS 7276, Limoges 87025, France.
Pauline RouaudUniversité de Limoges, CRIBL, UMR CNRS 7276, Limoges 87025, France.
Zeliha OrucUniversité de Limoges, CRIBL, UMR CNRS 7276, Limoges 87025, France.
Virginie MagnoneCNRS et Université de Nice Sophia Antipolis, Institut de Pharmacologie Moléculaire et Cellulaire, UMR 6097, Sophia Antipolis 06560, France.
Michel CognéUniversité de Limoges, CRIBL, UMR CNRS 7276, Limoges 87025, France.
Yves DenizotUniversité de Limoges, CRIBL, UMR CNRS 7276, Limoges 87025, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The IgH 3' regulatory region (3'RR) controls class switch recombination (CSR) and somatic hypermutation (SHM) in B cells. The mouse 3'RR contains four enhancer elements with hs1,2 flanked by inverted repeated sequences and the centre of a 25-kb palindrome bounded by two hs3 enhancer inverted copies (hs3a and hs3b). hs4 lies downstream of the palindrome. In mammals, evolution maintained this unique palindromic arrangement, suggesting that it is functionally significant. Here we report that deconstructing the palindromic IgH 3'RR strongly affects its function even when enhancers are preserved. CSR and IgH transcription appear to be poorly dependent on the 3'RR architecture and it is more or less preserved, provided 3'RR enhancers are present. By contrast, a 'palindromic effect' significantly lowers VH germline transcription, AID recruitment and SHM. In conclusion, this work indicates that the IgH 3'RR does not simply pile up enhancer units but also optimally exposes them into a functional architecture of crucial importance.

Indexed as

Inverted Repeat SequencesRegulatory Sequences, Nucleic AcidAnimalsFemaleImmunoglobulin Class SwitchingImmunoglobulin Heavy ChainsMaleMiceMice, Inbred C57BLImmunoglobulin Heavy Chains

Identifiers

PMID26883548
PMCPMC4757795

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.