Evidence map›Paper›PMID 26883464›Full record

ArticleThe Journal of allergy and clinical immunology2016

T-cell epitope conservation across allergen species is a major determinant of immunogenicity.

Luise Westernberg, Véronique Schulten, Jason A Greenbaum, Sara Natali, Victoria Tripple, Denise M McKinney, April Frazier, Heidi Hofer, Michael Wallner, Federica Sallusto and 2 more

Abstract read
In one paragraph

Article in The Journal of allergy and clinical immunology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. T Cell Epitope Predictions.Annual review of immunology · 2020
    Review
  12. Hydrolyzed diets may stimulate food-reactive lymphocytes in dogs.The Journal of veterinary medical science · 2020
    Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Pathogenic CD4The Journal of allergy and clinical immunology · 2017
    Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 3 countries.

Luise WesternbergLa Jolla Institute for Allergy and Immunology, La Jolla, Calif.
Véronique SchultenLa Jolla Institute for Allergy and Immunology, La Jolla, Calif.
Jason A GreenbaumLa Jolla Institute for Allergy and Immunology, La Jolla, Calif.
Sara NataliLaboratory of Cellular Immunology, Institute for Research in Biomedicine, University of Italian Switzerland, Bellinzona, Switzerland.
Victoria TrippleLa Jolla Institute for Allergy and Immunology, La Jolla, Calif.
Denise M McKinneyLa Jolla Institute for Allergy and Immunology, La Jolla, Calif.
April FrazierLa Jolla Institute for Allergy and Immunology, La Jolla, Calif.
Heidi HoferDepartment of Molecular Biology, University of Salzburg, Salzburg, Austria.
Michael WallnerDepartment of Molecular Biology, University of Salzburg, Salzburg, Austria.
Federica SallustoLaboratory of Cellular Immunology, Institute for Research in Biomedicine, University of Italian Switzerland, Bellinzona, Switzerland; Center of Medical Immunology, Institute for Research in Biomedicine, University of Italian Switzerland, Bellinzona, Switzerland.
Alessandro SetteLa Jolla Institute for Allergy and Immunology, La Jolla, Calif.
Bjoern PetersLa Jolla Institute for Allergy and Immunology, La Jolla, Calif. Electronic address: bpeters@liai.org.
La Jolla Institute for Immunology · USUniversità della Svizzera italiana · CHUniversity of Salzburg · AT

Funding

Understanding mechanisms in specific immunotherapy (SIT)U19AI100275 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI SETTE, ALESSANDRO · 2012 to 2017
$8.1M
Illumina HiSeq 2500 Sequencing SystemS10OD016262 · OD · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI RAO, ANJANA · 2013 to 2013
$600k
European Research Council 323183NIAID NIH HHS U19 AI100275NIH HHS S10 OD016262
6 · The paper itself

Abstract

backgroundPatients with pollen allergies are frequently polysensitized. Pollens contain epitopes that are conserved across multiple species.

objectiveWe sought to demonstrate that cross-reactive T cells that recognize conserved epitopes show higher levels of expansion than T cells recognizing monospecific epitopes because of more frequent stimulation.

methodRNA was sequenced from 9 pollens, and the reads were assembled de novo into more than 50,000 transcripts. T-cell epitopes from timothy grass (Phleum pratense) were examined for conservation in these transcripts, and this was correlated to their ability to induce T-cell responses. T cells were expanded in vitro with P pratense-derived peptides and tested for cross-reactivity to pollen extracts in ELISpot assays.

resultsWe found that antigenic proteins are more conserved than nonimmunogenic proteins in P pratense pollen. Additionally, P pratense epitopes that were highly conserved across pollens elicited more T-cell responses in donors with grass allergy than less conserved epitopes. Moreover, conservation of a P pratense peptide at the transcriptomic level correlated with the ability of that peptide to trigger T cells that were cross-reactive with other non-P pratense pollen extracts.

conclusionWe found a correlation between conservation of peptides in plant pollens and their T-cell immunogenicity within P pratense, as well as their ability to induce cross-reactive T-cell responses. T cells recognizing conserved epitopes might be more prominent because they can be stimulated by a broader range of pollens and thereby drive polysensitization in allergic donors. We propose that conserved peptides could potentially be used in diagnostic or immunomodulatory approaches that address the issue of polysensitization and target multiple pollen allergies.

Indexed as

AdultAllergensAntigens, PlantConserved SequenceCross ReactionsEpitopes, T-LymphocyteEvolution, MolecularFemaleGene Expression ProfilingHumansImmunoglobulin EMaleMiddle AgedPoaceaePollenRhinitis, Allergic, SeasonalAllergensAntigens, PlantEpitopes, T-LymphocyteImmunoglobulin Ecross-reactivityepitopepollen allergyRNA sequencingsequence conservationT celltimothy grass allergytranscriptome

Identifiers

PMID26883464
PMCPMC4975972
OpenAlexW2272453022

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.