Evidence map›Paper›PMID 26882917›Full record

ArticleFunctional & integrative genomics2016

Comprehensive identification of LMW-GS genes and their protein products in a common wheat variety.

Jong-Yeol Lee, Hye-Rang Beom, Susan B Altenbach, Sun-Hyung Lim, Yeong-Tae Kim, Chon-Sik Kang, Ung-Han Yoon, Ravi Gupta, Sun-Tae Kim, Sang-Nag Ahn and 1 more

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Article in Functional & integrative genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Jong-Yeol LeeNational Academy of Agricultural Science, RDA, Jeonju, 560-500, Korea. jy0820@korea.kr.
Hye-Rang BeomNational Academy of Agricultural Science, RDA, Jeonju, 560-500, Korea.
Susan B AltenbachUSDA-ARS, Western Regional Research Center, 800 Buchanan Street, Albany, CA, 94710, USA.
Sun-Hyung LimNational Academy of Agricultural Science, RDA, Jeonju, 560-500, Korea.
Yeong-Tae KimDepartment of Bioresource Sciences, Andong National University, Andong, 760-749, Korea.
Chon-Sik KangNational Institute of Crop Science, RDA, Jeonju, 565-851, Korea.
Ung-Han YoonNational Academy of Agricultural Science, RDA, Jeonju, 560-500, Korea.
Ravi GuptaDepartment of Plant Bioscience, Pusan National University, Miryang, 627-706, Korea.
Sun-Tae KimDepartment of Plant Bioscience, Pusan National University, Miryang, 627-706, Korea.
Sang-Nag AhnDepartment of Agronomy, Chungnam National University, Daejeon, 357-764, Korea.
Young-Mi KimNational Academy of Agricultural Science, RDA, Jeonju, 560-500, Korea. ymikim@korea.kr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although it is well known that low-molecular-weight glutenin subunits (LMW-GS) from wheat affect bread and noodle processing quality, the function of specific LMW-GS proteins remains unclear. It is important to find the genes that correspond to individual LMW-GS proteins in order to understand the functions of specific proteins. The objective of this study was to link LMW-GS genes and haplotypes characterized using well known Glu-A3, Glu-B3, and Glu-D3 gene-specific primers to their protein products in a single wheat variety. A total of 36 LMW-GS genes and pseudogenes were amplified from the Korean cultivar Keumkang. These include 11 Glu-3 gene haplotypes, two from the Glu-A3 locus, two from the Glu-B3 locus, and seven from the Glu-D3 locus. To establish relationships between gene haplotypes and their protein products, a glutenin protein fraction was separated by two-dimensional gel electrophoresis (2-DGE) and 17 protein spots were analyzed by N-terminal amino acid sequencing and tandem mass spectrometry (MS/MS). LMW-GS proteins were identified that corresponded to all Glu-3 gene haplotypes except the pseudogenes. This is the first report of the comprehensive characterization of LMW-GS genes and their corresponding proteins in a single wheat cultivar. Our approach will be useful to understand the contributions of individual LMW-GS to the end-use quality of flour.

Indexed as

BreadAllelesAmino Acid SequenceElectrophoresis, Gel, Two-DimensionalGlutensHaplotypesMolecular WeightPseudogenesTandem Mass SpectrometryTriticumgluteninGlutensLMW-GS genesProteomicsTriticum aestivum L.Wheat quality improvement

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.