Evidence map›Paper›PMID 26880557›Full record

ArticleeLife2016

Non-canonical antagonism of PI3K by the kinase Itpkb delays thymocyte β-selection and renders it Notch-dependent.

Luise Westernberg, Claire Conche, Yina Hsing Huang, Stephanie Rigaud, Yisong Deng, Sabine Siegemund, Sayak Mukherjee, Lyn'Al Nosaka, Jayajit Das, Karsten Sauer

Open access · goldAbstract read
In one paragraph

Article in eLife, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 21 citations in OpenAlex.

  1. Pooled it
  2. Review
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  8. Metabolic regulation of T cell development.Frontiers in immunology · 2022
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  9. Review
  10. Review
  11. Article
  12. Diverse Roles of Akt in T cells.Immunometabolism · 2021
    Article
  13. Article
  14. Review
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Luise WesternbergDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, United States.
Claire ConcheDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, United States.
Yina Hsing HuangDepartment of Pathology, Geisel School of Medicine, Lebanon, United States.
Stephanie RigaudDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, United States.
Yisong DengDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, United States.
Sabine SiegemundDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, United States.
Sayak MukherjeeDepartment of Pediatrics, The Ohio State University, Columbus, United States.
Lyn'Al NosakaDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, United States.
Jayajit DasDepartment of Pediatrics, The Ohio State University, Columbus, United States.
Karsten SauerDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, United States.
Scripps Research Institute · USBattelle · USThe Ohio State University · US

Funding

PIP3-INDEPENDENT REGULATION OF AKT1 ACTIVITY IN T CELLSR01AI089805 · NIAID · WASHINGTON UNIVERSITY · PI HUANG, YINA HSING · 2011 to 2021
$4.2M
Inositol-Trisphosphate Kinase B (ItpkB) in T Cell Development and FunctionR01AI070845 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI SAUER, KARSTEN · 2008 to 2012
$3.0M
INTERDISCIPLINARY TRAINING PROGRAM IN IMMUNOLOGYT32AI007606 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI NEMAZEE, DAVID · 1999 to 2013
$2.1M
Mechanisms of Kinase Function and Drug Resistance in CancerR01GM100785 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI CHE, JIANWEI, SAUER, KARSTEN · 2011 to 2014
$1.4M
Uncovering Basic Signaling Mechanisms in NK Cells in Mice and HumansR56AI108880 · NIAID · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI DAS, JAYAJIT · 2014 to 2014
$455k
A computational model to uncover basic signaling mechanisms of NK cell activationR56AI090115 · NIAID · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI DAS, JAYAJIT · 2012 to 2012
$186k
PH domains as Calmodulin binding domainsR03AI122242 · NIAID · DARTMOUTH COLLEGE · PI HUANG, YINA HSING · 2016 to 2017
$162k
NIAID NIH HHS R01 AI070845NIAID NIH HHS R01 AI089805NIAID NIH HHS R03 AI122242NIAID NIH HHS R56 AI090115NIAID NIH HHS R56 AI108880NIAID NIH HHS T32 AI007606NIGMS NIH HHS R01 GM100785
6 · The paper itself

Abstract

β-selection is the most pivotal event determining αβ T cell fate. Here, surface-expression of a pre-T cell receptor (pre-TCR) induces thymocyte metabolic activation, proliferation, survival and differentiation. Besides the pre-TCR, β-selection also requires co-stimulatory signals from Notch receptors - key cell fate determinants in eukaryotes. Here, we show that this Notch-dependence is established through antagonistic signaling by the pre-TCR/Notch effector, phosphoinositide 3-kinase (PI3K), and by inositol-trisphosphate 3-kinase B (Itpkb). Canonically, PI3K is counteracted by the lipid-phosphatases Pten and Inpp5d/SHIP-1. In contrast, Itpkb dampens pre-TCR induced PI3K/Akt signaling by producing IP4, a soluble antagonist of the Akt-activating PI3K-product PIP3. Itpkb(-/-) thymocytes are pre-TCR hyperresponsive, hyperactivate Akt, downstream mTOR and metabolism, undergo an accelerated β-selection and can develop to CD4(+)CD8(+) cells without Notch. This is reversed by inhibition of Akt, mTOR or glucose metabolism. Thus, non-canonical PI3K-antagonism by Itpkb restricts pre-TCR induced metabolic activation to enforce coincidence-detection of pre-TCR expression and Notch-engagement.

Indexed as

Cell DifferentiationCell ProliferationPhosphoinositide-3 Kinase InhibitorsAnimalsCell SurvivalMice, Inbred C57BLPhosphotransferases (Alcohol Group Acceptor)Receptor, Notch1ThymocytesInositol 1,4,5-trisphosphate 3-kinasePhosphoinositide-3 Kinase InhibitorsPhosphotransferases (Alcohol Group Acceptor)Receptor, Notch1beta-selectioncell biologyimmunologyItpkbmouseNotchPI3Kpre-TCRthymocytes

Identifiers

PMID26880557
PMCPMC4764578
OpenAlexW2290112748

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.