Evidence map›Paper›PMID 26880483›Full record

ArticleChemistry (Weinheim an der Bergstrasse, Germany)2016

Trianguleniums as Optical Probes for G-Quadruplexes: A Photophysical, Electrochemical, and Computational Study.

Arun Shivalingam, Aurimas Vyšniauskas, Tim Albrecht, Andrew J P White, Marina K Kuimova, Ramon Vilar

Open access · hybridAbstract read
In one paragraph

Article in Chemistry (Weinheim an der Bergstrasse, Germany), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
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  5. Review
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  8. Review
  9. Article
  10. Article
  11. Trioxatriangulenium (TOTAChemical science · 2021
    Article
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  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Arun ShivalingamDepartment of Chemistry, Imperial College London, South Kensington, London, SW7 2AZ, UK.
Aurimas VyšniauskasDepartment of Chemistry, Imperial College London, South Kensington, London, SW7 2AZ, UK.
Tim AlbrechtDepartment of Chemistry, Imperial College London, South Kensington, London, SW7 2AZ, UK.
Andrew J P WhiteDepartment of Chemistry, Imperial College London, South Kensington, London, SW7 2AZ, UK.
Marina K KuimovaDepartment of Chemistry, Imperial College London, South Kensington, London, SW7 2AZ, UK. m.kuimova@imperial.ac.uk.
Ramon VilarDepartment of Chemistry, Imperial College London, South Kensington, London, SW7 2AZ, UK. r.vilar@imperial.ac.uk.ORCID http://orcid.org/0000-0003-2992-199X
Imperial College London · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nucleic acids can adopt non-duplex topologies, such as G-quadruplexes in vitro. Yet it has been challenging to establish their existence and function in vivo due to a lack of suitable tools. Recently, we identified the triangulenium compound DAOTA-M2 as a unique fluorescence probe for such studies. This probe's emission lifetime is highly dependent on the topology of the DNA it interacts with opening up the possibility of carrying out live-cell imaging studies. Herein, we describe the origin of its fluorescence selectivity for G-quadruplexes. Cyclic voltammetry predicts that the appended morpholino groups can act as intra- molecular photo-induced electron transfer (PET) quenchers. Photophysical studies show that a delicate balance between this effect and inter-molecular PET with nucleobases is key to the overall fluorescence enhancement observed upon nucleic acid binding. We utilised computational modelling to demonstrate a conformational dependence of intra-molecular PET. Finally, we performed orthogonal studies with a triangulenium compound, in which the morpholino groups were removed, and demonstrated that this change inverts triangulenium fluorescence selectivity from G-quadruplex to duplex DNA, thus highlighting the importance of fine tuning the molecular structure not only for target affinity, but also for fluorescence response.

Indexed as

G-QuadruplexesDNAFluorescent DyesMolecular StructureNucleic AcidsOligonucleotidesSpectrometry, FluorescenceDNAFluorescent DyesNucleic AcidsOligonucleotidesDNAnucleic acidsoptical probesquadruplexestriangulenium

Identifiers

PMID26880483
PMCPMC4991273
OpenAlexW2274516793

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.