Evidence map›Paper›PMID 26880370›Full record

ArticleMolecular cancer2016

Mutation of epigenetic regulators TET2 and MLL3 in patients with HTLV-I-induced acute adult T-cell leukemia.

Chien-Hung Yeh, Xue Tao Bai, Ramona Moles, Lee Ratner, Thomas A Waldmann, Toshiki Watanabe, Watanabe Toshiki, Christophe Nicot

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Molecular cancer, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. IncreasedInternational journal of molecular sciences · 2024
    Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Chien-Hung YehDepartment of Pathology, Center for Viral Oncology, University of Kansas Medical Center, 3901 Rainbow Boulevard, Kansas City, KS, 66160, USA.
Xue Tao BaiDepartment of Pathology, Center for Viral Oncology, University of Kansas Medical Center, 3901 Rainbow Boulevard, Kansas City, KS, 66160, USA.
Ramona MolesDepartment of Pathology, Center for Viral Oncology, University of Kansas Medical Center, 3901 Rainbow Boulevard, Kansas City, KS, 66160, USA.
Lee RatnerDepartment of Medicine, Division of Molecular Oncology, Washington University School of Medicine, Saint Louis, MO, 63110, USA.
Thomas A WaldmannLymphoid Malignancies Branch, Center for Cancer Research, National Institutes of Health, Building 10, Room 4 N/115, 10 Center Drive, Bethesda, MD, 20892, USA.
Toshiki WatanabeDepartment of Medical Genome Sciences, University of Tokyo, Tokyo, Japan.
Watanabe ToshikiDepartment of Medical Genome Sciences, University of Tokyo, Tokyo, Japan.
Christophe NicotDepartment of Pathology, Center for Viral Oncology, University of Kansas Medical Center, 3901 Rainbow Boulevard, Kansas City, KS, 66160, USA. cnicot@kumc.edu.
University of Kansas Medical Center · USCenter for Cancer Research · USThe University of Tokyo · JPWashington University in St. Louis · US

Funding

Role of Inflammation in Tax-mediated TumorigenesisP01CA100730 · NCI · WASHINGTON UNIVERSITY · PI Malachi Griffith · 2003 to 2026
$44.8M
IL-2:IL-15 : implications for cancer therapy (Investigator -Initiated Project)ZIASC004002 · NCI · DIVISION OF CLINICAL SCIENCES - NCI · PI WALDMANN, THOMAS · 2009 to 2022
$22.9M
PROLIFERATIVE EFFECTS OF HTLV1R01CA063417 · NCI · WASHINGTON UNIVERSITY · PI RATNER, LEE · 1995 to 2017
$3.7M
Mechanisms of human T-cell immortalization by HTLV-I TaxR01CA106258 · NCI · UNIVERSITY OF KANSAS MEDICAL CENTER · PI NICOT, CHRISTOPHE P · 2005 to 2015
$2.2M
NCI NIH HHS CA106258NCI NIH HHS P01 CA100730NCI NIH HHS R01 CA063417NCI NIH HHS R01 CA106258
6 · The paper itself

Abstract

backgroundEpigenetic regulators play a critical role in the maintenance of specific chromatin domains in an active or repressed state. Disruption of epigenetic regulatory mechanisms is widespread in cancer cells and largely contributes to the transformation process through active repression of tumor suppressor genes. While mutations of epigenetic regulators have been reported in various lymphoid malignancies and solid cancers, mutation of these genes in HTLV-I-associated T-cell leukemia has not been investigated.

methodHere we used whole genome next generation sequencing (NGS) of uncultured freshly isolated ATL samples and identified the presence of mutations in SUZ12, DNMT1, DNMT3A, DNMT3B, TET1, TET2, IDH1, IDH2, MLL, MLL2, MLL3 and MLL4.

resultsTET2 was the most frequently mutated gene, occurring in 32 % (10/31) of ATL samples analyzed. Interestingly, NGS revealed nonsense mutations accompanied by loss of heterozygosity (LOH) in TET2 and MLL3, which was further confirmed by cloning and direct sequencing of DNA from uncultured cells. Finally, direct sequencing of matched control and tumor samples revealed that TET2 mutation was present only in ATL tumor cells.

conclusionsOur results suggest that inactivation of MLL3 and TET2 may play an important role in the tumorigenesis process of HTLV-I-induced ATL.

Indexed as

Epigenesis, GeneticAdultBase SequenceCell Line, TransformedCloning, MolecularDioxygenasesDNA-Binding ProteinsDNA Mutational AnalysisHumansHuman T-lymphotropic virus 1Leukemia-Lymphoma, Adult T-CellMolecular Sequence DataMutationPolymerase Chain ReactionProto-Oncogene ProteinsReference StandardsDioxygenasesDNA-Binding ProteinsKMT2C protein, humanProto-Oncogene ProteinsTET2 protein, human

Identifiers

PMID26880370
PMCPMC4754821
OpenAlexW2278433401

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.