Evidence map›Paper›PMID 26879554›Full record

ArticleThe journal of physical chemistry. B2016

Reaction Mechanism for Direct Proton Transfer from Carbonic Acid to a Strong Base in Aqueous Solution I: Acid and Base Coordinate and Charge Dynamics.

Snehasis Daschakraborty, Philip M Kiefer, Yifat Miller, Yair Motro, Dina Pines, Ehud Pines, James T Hynes

Abstract read
In one paragraph

Article in The journal of physical chemistry. B, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. The Role of Carbonate in Catalytic Oxidations.Accounts of chemical research · 2020
    Article
  3. Article
  4. Intact carbonic acid is a viable protonating agent for biological bases.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  5. CScientific reports · 2019
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Snehasis DaschakrabortyDepartment of Chemistry and Biochemistry, University of Colorado , Boulder, Colorado 80309-0215, United States.
Philip M KieferDepartment of Chemistry and Biochemistry, University of Colorado , Boulder, Colorado 80309-0215, United States.
Yifat MillerDepartment of Chemistry, Ben-Gurion University of the Negev , P.O. Box 653, Beer-Sheva 84105, Israel.
Yair MotroDepartment of Chemistry, Ben-Gurion University of the Negev , P.O. Box 653, Beer-Sheva 84105, Israel.
Dina PinesDepartment of Chemistry, Ben-Gurion University of the Negev , P.O. Box 653, Beer-Sheva 84105, Israel.
Ehud PinesDepartment of Chemistry, Ben-Gurion University of the Negev , P.O. Box 653, Beer-Sheva 84105, Israel.
James T HynesDepartment of Chemistry and Biochemistry, University of Colorado , Boulder, Colorado 80309-0215, United States.

Funding

The Physiological Role of Carbonic Acid and Lactic Acid as Protonating Agents ofR01GM101160 · NIGMS · UNIVERSITY OF COLORADO · PI HYNES, JAMES THOMAS, PINES, EHUD · 2012 to 2014
$977k
NIGMS NIH HHS R01 GM101160PHS HHS P0 1000125420
6 · The paper itself

Abstract

Protonation by carbonic acid H2CO3 of the strong base methylamine CH3NH2 in a neutral contact pair in aqueous solution is followed via Car-Parrinello molecular dynamics simulations. Proton transfer (PT) occurs to form an aqueous solvent-stabilized contact ion pair within 100 fs, a fast time scale associated with the compression of the acid-base hydrogen-bond (H-bond), a key reaction coordinate. This rapid barrierless PT is consistent with the carbonic acid-protonated base pKa difference that considerably favors the PT, and supports the view of intact carbonic acid as potentially important proton donor in assorted biological and environmental contexts. The charge redistribution within the H-bonded complex during PT supports a Mulliken picture of charge transfer from the nitrogen base to carbonic acid without altering the transferring hydrogen's charge from approximately midway between that of a hydrogen atom and that of a proton.

Indexed as

Carbonic AcidMolecular Dynamics SimulationProtonsSolutionsWaterCarbonic AcidProtonsSolutionsWater

Identifiers

PMID26879554
PMCPMC5763008

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.