Evidence map›Paper›PMID 26879532›Full record

ArticleScientific reports2016

Whole genome resequencing of the human parasite Schistosoma mansoni reveals population history and effects of selection.

Thomas Crellen, Fiona Allan, Sophia David, Caroline Durrant, Thomas Huckvale, Nancy Holroyd, Aidan M Emery, David Rollinson, David M Aanensen, Matthew Berriman and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 116 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Haplotype-resolved genome ofZoological research · 2026
    Article
  5. Methylation-associated mutagenesis underlies variation in the mutation spectrum across eukaryotes.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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  7. Article
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  13. Review
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  16. Article
  17. Reaching the World Health Organization elimination targets for schistosomiasis: the importance of a One Health perspective.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
    Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Thomas CrellenDepartment of Infectious Disease Epidemiology, Imperial College London, St Mary's Campus, Norfolk Place, London W2 1PG, United Kingdom.
Fiona AllanDepartment of Life Sciences, Natural History Museum, London, SW7 5BD, United Kingdom.
Sophia DavidWellcome Trust Sanger Institute, Hinxton, CB10 1SA, United Kingdom.
Caroline DurrantWellcome Trust Sanger Institute, Hinxton, CB10 1SA, United Kingdom.
Thomas HuckvaleWellcome Trust Sanger Institute, Hinxton, CB10 1SA, United Kingdom.
Nancy HolroydWellcome Trust Sanger Institute, Hinxton, CB10 1SA, United Kingdom.
Aidan M EmeryDepartment of Life Sciences, Natural History Museum, London, SW7 5BD, United Kingdom.
David RollinsonDepartment of Life Sciences, Natural History Museum, London, SW7 5BD, United Kingdom.
David M AanensenDepartment of Infectious Disease Epidemiology, Imperial College London, St Mary's Campus, Norfolk Place, London W2 1PG, United Kingdom.
Matthew BerrimanWellcome Trust Sanger Institute, Hinxton, CB10 1SA, United Kingdom.
Joanne P WebsterDepartment of Infectious Disease Epidemiology, Imperial College London, St Mary's Campus, Norfolk Place, London W2 1PG, United Kingdom.
James A CottonWellcome Trust Sanger Institute, Hinxton, CB10 1SA, United Kingdom.
Wellcome Sanger Institute · GBNatural History Museum · GBRoyal Veterinary College · GBUniversity of London · GB

Funding

Medical Research CouncilWellcome TrustWellcome Trust 098051
6 · The paper itself

Abstract

Schistosoma mansoni is a parasitic fluke that infects millions of people in the developing world. This study presents the first application of population genomics to S. mansoni based on high-coverage resequencing data from 10 global isolates and an isolate of the closely-related Schistosoma rodhaini, which infects rodents. Using population genetic tests, we document genes under directional and balancing selection in S. mansoni that may facilitate adaptation to the human host. Coalescence modeling reveals the speciation of S. mansoni and S. rodhaini as 107.5-147.6KYA, a period which overlaps with the earliest archaeological evidence for fishing in Africa. Our results indicate that S. mansoni originated in East Africa and experienced a decline in effective population size 20-90KYA, before dispersing across the continent during the Holocene. In addition, we find strong evidence that S. mansoni migrated to the New World with the 16-19th Century Atlantic Slave Trade.

Indexed as

Genetics, PopulationGenome, HelminthSelection, GeneticSequence Analysis, DNAAnimalsEvolution, MolecularGenetic VariationHumansPhenotypePhylogenyPolymorphism, Single NucleotidePopulation DensitySchistosoma mansoni

Identifiers

PMID26879532
PMCPMC4754680
OpenAlexW2281717002

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.