Evidence map›Paper›PMID 26878934›Full record

ReviewPathogens and global health2015

Bacterial genomic epidemiology, from local outbreak characterization to species-history reconstruction.

Stefano Gaiarsa, Leone De Marco, Francesco Comandatore, Piero Marone, Claudio Bandi, Davide Sassera

Abstract readReview
In one paragraph

Review in Pathogens and global health, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Avian strains of emerging pathogenFrontiers in microbiology · 2022
    Article
  2. Article
  3. Review
  4. Article
  5. Spatial and Temporal Patterns of Typhoid and Paratyphoid Fever Outbreaks: A Worldwide Review, 1990-2018.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Stefano Gaiarsa1 Struttura Complessa di Microbiologia e Virologia, Fondazione IRCCS Policlinico San Matteo , Pavia, Italy.
Leone De Marco
Francesco Comandatore
Piero Marone
Claudio Bandi
Davide Sassera

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacteriology has embraced the next-generation sequencing revolution, swiftly moving from the time of single genome sequencing to the age of genomic epidemiology. Hundreds and now even thousands of genomes are being sequenced for single bacterial species, allowing unprecedented levels of resolution and insight in the evolution and epidemic diffusion of the main bacterial pathogens. Here, we present a review of some of the most recent and groundbreaking studies in this field.

Indexed as

BacteriaBacterial InfectionsDisease OutbreaksGenes, BacterialGenomicsHigh-Throughput Nucleotide SequencingHumansMycobacterium tuberculosisStaphylococcal InfectionsStaphylococcus aureusTuberculosisBacteriaCarbapenem-resistant EnterobacteriaceaeGenomic epidemiologyMycobacterium tuberculosisNext-generation sequencingSalmonella TyphiStaphylococcus aureusStreptococcus pneumoniae

Identifiers

PMID26878934
PMCPMC4768628

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.