Evidence map›Paper›PMID 26877556›Full record

ArticleSIAM journal on applied mathematics

DIFFUSED SOLUTE-SOLVENT INTERFACE WITH POISSON-BOLTZMANN ELECTROSTATICS: FREE-ENERGY VARIATION AND SHARP-INTERFACE LIMIT.

B O Li, Yuan Liu

Abstract read
In one paragraph

Article in SIAM journal on applied mathematics. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

2 authors.

B O LiDepartment of Mathematics and Quantitative Biology Graduate Program, University of California, San Diego, 9500 Gilman Drive, Mail code: 0112, La Jolla, CA 92093-0112, USA.
Yuan LiuDepartment of Mathematics, Fudan University, 220 Handan Road, Yangpu District, Shanghai, 200433, P. R. China, and Department of Mathematics, University of California, San Diego, 9500 Gilman Drive, Mail code: 0112, La Jolla, CA 92093-0112, USA.

Funding

Level-Set Variational Implicit-Solvent Approach to Biomolecular InteractionsR01GM096188 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LI, BO · 2010 to 2013
$1.2M
NIGMS NIH HHS R01 GM096188
6 · The paper itself

Abstract

A phase-field free-energy functional for the solvation of charged molecules (e.g., proteins) in aqueous solvent (i.e., water or salted water) is constructed. The functional consists of the solute volumetric and solute-solvent interfacial energies, the solute-solvent van der Waals interaction energy, and the continuum electrostatic free energy described by the Poisson-Boltzmann theory. All these are expressed in terms of phase fields that, for low free-energy conformations, are close to one value in the solute phase and another in the solvent phase. A key property of the model is that the phase-field interpolation of dielectric coefficient has the vanishing derivative at both solute and solvent phases. The first variation of such an effective free-energy functional is derived. Matched asymptotic analysis is carried out for the resulting relaxation dynamics of the diffused solute-solvent interface. It is shown that the sharp-interface limit is exactly the variational implicit-solvent model that has successfully captured capillary evaporation in hydrophobic confinement and corresponding multiple equilibrium states of underlying biomolecular systems as found in experiment and molecular dynamics simulations. Our phase-field approach and analysis can be used to possibly couple the description of interfacial fluctuations for efficient numerical computations of biomolecular interactions.

Indexed as

diffused solute-solvent interfacematched asymptotic analysisPoisson–Boltzmann theorysharp-interface limitvariational implicit-solvent model

Identifiers

PMID26877556
PMCPMC4752183

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.