Evidence map›Paper›PMID 26876635›Full record

ArticleScientific reports2016

Zebrafish Collagen Type I: Molecular and Biochemical Characterization of the Major Structural Protein in Bone and Skin.

C Gistelinck, R Gioia, A Gagliardi, F Tonelli, L Marchese, L Bianchi, C Landi, L Bini, A Huysseune, P E Witten and 13 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 126 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Review
  10. Review
  11. The Pattern of Gene Expression (Animals : an open access journal from MDPI · 2024
    Article
  12. Evolution and Spatiotemporal Expression ofJournal of developmental biology · 2024
    Article
  13. Article
  14. Article
  15. Evaluation of Post-Larval Diets for Indoor Weaned Largemouth Bass (Animals : an open access journal from MDPI · 2023
    Article
  16. Article
  17. Article
  18. Elevated Water COBiomolecules · 2023
    Article
  19. Disruption of theFrontiers in cell and developmental biology · 2023
    Article
  20. Fermented jellyfish (Frontiers in pharmacology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 6 institutions in 3 countries.

C GistelinckCenter for Medical Genetics Ghent, Ghent University, Ghent, Belgium.
R GioiaDepartment of Molecular Medicine, Biochemistry Unit, University of Pavia, Pavia, Italy.
A GagliardiFunctional Proteomics Lab., Department of Life Sciences, University of Siena, Siena, Italy.
F TonelliDepartment of Molecular Medicine, Biochemistry Unit, University of Pavia, Pavia, Italy.
L MarcheseDepartment of Molecular Medicine, Biochemistry Unit, University of Pavia, Pavia, Italy.
L BianchiFunctional Proteomics Lab., Department of Life Sciences, University of Siena, Siena, Italy.
C LandiFunctional Proteomics Lab., Department of Life Sciences, University of Siena, Siena, Italy.
L BiniFunctional Proteomics Lab., Department of Life Sciences, University of Siena, Siena, Italy.
A HuysseuneBiology Department, Ghent University, Ghent, Belgium.
P E WittenBiology Department, Ghent University, Ghent, Belgium.
A StaesDepartment of Medical Protein Research, VIB, Ghent, Belgium.
K GevaertDepartment of Medical Protein Research, VIB, Ghent, Belgium.
N De RockerCenter for Medical Genetics Ghent, Ghent University, Ghent, Belgium.
B MentenCenter for Medical Genetics Ghent, Ghent University, Ghent, Belgium.
F MalfaitCenter for Medical Genetics Ghent, Ghent University, Ghent, Belgium.
S LeikinEunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD, USA.
S CarraDepartment of Biosciences, University of Milano, Milan, Italy.
R TenniDepartment of Molecular Medicine, Biochemistry Unit, University of Pavia, Pavia, Italy.
A RossiDepartment of Molecular Medicine, Biochemistry Unit, University of Pavia, Pavia, Italy.
A De PaepeCenter for Medical Genetics Ghent, Ghent University, Ghent, Belgium.
P CouckeCenter for Medical Genetics Ghent, Ghent University, Ghent, Belgium.
A WillaertCenter for Medical Genetics Ghent, Ghent University, Ghent, Belgium.
A ForlinoDepartment of Molecular Medicine, Biochemistry Unit, University of Pavia, Pavia, Italy.
Ghent University Hospital · BEUniversity of Pavia · ITGhent University · BEUniversity of Siena · ITEunice Kennedy Shriver National Institute of Child Health and Human Development · USUniversity of Milan · IT

Funding

Collagen-related diseases ZIAHD000256 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI LEIKIN, SERGEY · 2009 to 2025
$19.7M
Telethon GGP13098
6 · The paper itself

Abstract

Over the last years the zebrafish imposed itself as a powerful model to study skeletal diseases, but a limit to its use is the poor characterization of collagen type I, the most abundant protein in bone and skin. In tetrapods collagen type I is a trimer mainly composed of two α1 chains and one α2 chain, encoded by COL1A1 and COL1A2 genes, respectively. In contrast, in zebrafish three type I collagen genes exist, col1a1a, col1a1b and col1a2 coding for α1(I), α3(I) and α2(I) chains. During embryonic and larval development the three collagen type I genes showed a similar spatio-temporal expression pattern, indicating their co-regulation and interdependence at these stages. In both embryonic and adult tissues, the presence of the three α(I) chains was demonstrated, although in embryos α1(I) was present in two distinct glycosylated states, suggesting a developmental-specific collagen composition. Even though in adult bone, skin and scales equal amounts of α1(I), α3(I) and α2(I) chains are present, the presented data suggest a tissue-specific stoichiometry and/or post-translational modification status for collagen type I. In conclusion, this data will be useful to properly interpret results and insights gained from zebrafish models of skeletal diseases.

Indexed as

Amino Acid SequenceAnimalsBone DevelopmentCollagenCollagen Type IGene Expression Regulation, DevelopmentalProtein Processing, Post-TranslationalSkinZebrafishZebrafish ProteinsCOL1A2 protein, zebrafishCollagenCollagen Type IZebrafish Proteins

Identifiers

PMID26876635
PMCPMC4753508
OpenAlexW2299945326

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.