Evidence map›Paper›PMID 26874653›Full record

ArticleHepatology (Baltimore, Md.)2016

Recurrent recessive mutation in deoxyguanosine kinase causes idiopathic noncirrhotic portal hypertension.

Sílvia Vilarinho, Sinan Sari, Güldal Yilmaz, Amy L Stiegler, Titus J Boggon, Dhanpat Jain, Gulen Akyol, Buket Dalgic, Murat Günel, Richard P Lifton

Open access · bronzeAbstract read
In one paragraph

Article in Hepatology (Baltimore, Md.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 65 citations in OpenAlex.

  1. Review
  2. Article
  3. Non-cirrhotic intrahepatic portal hypertension: Is the gun loaded?Indian journal of gastroenterology : official journal of the Indian Society of Gastroenterology · 2024
    Article
  4. Genetics of liver disease in adults.Hepatology communications · 2024
    Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. Case report: NovelFrontiers in pediatrics · 2023
    Article
  10. AiLIVER · 2022
    Review
  11. Article
  12. Review
  13. [Progress in the diagnosis and treatment of idiopathic non-cirrhotic portal hypertension].Zhonghua gan zang bing za zhi = Zhonghua ganzangbing zazhi = Chinese journal of hepatology · 2021
    Article
  14. Article
  15. Undiagnosed liver diseases.Translational gastroenterology and hepatology · 2021
    Review
  16. Exome Sequencing in Clinical Hepatology.Hepatology (Baltimore, Md.) · 2019
    Review
  17. Article
  18. Review
  19. Review
  20. Recessive Mutations inHepatology communications · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Sílvia VilarinhoDepartment of Internal Medicine, Section of Digestive Diseases, Yale University School of Medicine, New Haven, CT.
Sinan SariDepartment of Pediatrics, Division of Gastroenterology, Gazi University, Faculty of Medicine, Ankara, Turkey.
Güldal YilmazDepartment of Pathology, Gazi University, Faculty of Medicine, Ankara, Turkey.
Amy L StieglerDepartment of Pharmacology, Yale University School of Medicine, New Haven, CT.
Titus J BoggonDepartment of Pharmacology, Yale University School of Medicine, New Haven, CT.
Dhanpat JainDepartment of Internal Medicine, Section of Digestive Diseases, Yale University School of Medicine, New Haven, CT.
Gulen AkyolDepartment of Pathology, Gazi University, Faculty of Medicine, Ankara, Turkey.
Buket DalgicDepartment of Pediatrics, Division of Gastroenterology, Gazi University, Faculty of Medicine, Ankara, Turkey.
Murat GünelDepartment of Genetics, Yale University School of Medicine, New Haven, CT.
Richard P LiftonDepartment of Genetics, Yale University School of Medicine, New Haven, CT.
Yale University · USGazi University · TR

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Yale Liver CenterP30DK034989 · NIDDK · YALE UNIVERSITY · PI YASUKO IWAKIRI · 1986 to 2026
$31.1M
Renal Physiology and Phenotyping CoreP30DK079310 · NIDDK · YALE UNIVERSITY · PI ARONSON, PETER S. · 2008 to 2022
$16.8M
Yale Center for Mendelian DisordersU54HG006504 · NHGRI · YALE UNIVERSITY · PI GERSTEIN, MARK BENDER, GUNEL, MURAT · 2012 to 2015
$11.0M
NCATS NIH HHS UL1 TR001863NHGRI NIH HHS U54 HG006504NIDDK NIH HHS P30 DK034989NIDDK NIH HHS P30 DK079310
6 · The paper itself

Abstract

unlabelledDespite advances in the diagnosis and management of idiopathic noncirrhotic portal hypertension, its pathogenesis remains elusive. Insight may be gained from study of early-onset familial idiopathic noncirrhotic portal hypertension, in which Mendelian mutations may account for disease. We performed exome sequencing of eight subjects from six kindreds with onset of portal hypertension of indeterminate etiology during infancy or childhood. Three subjects from two consanguineous families shared the identical rare homozygous p.N46S mutation in DGUOK, a deoxyguanosine kinase required for mitochondrial DNA replication; haplotype sharing demonstrated that the mutation in the two families was inherited from a remote common ancestor. All three affected subjects had stable portal hypertension with noncirrhotic liver disease for 6-16 years of follow-up. This mutation impairs adenosine triphosphate binding and reduces catalytic activity. Loss-of-function mutations in DGUOK have previously been implicated in cirrhosis and liver failure but not in isolated portal hypertension. Interestingly, treatment of patients with human immunodeficiency viral infection with the nucleoside analogue didanosine is known to cause portal hypertension in a subset of patients and lowers deoxyguanosine kinase levels in vitro; the current findings implicate these effects on deoxyguanosine kinase in the causal mechanism.

conclusionOur findings provide new insight into the mechanisms mediating inherited and acquired noncirrhotic portal hypertension, expand the phenotypic spectrum of DGUOK deficiency, and provide a new genetic test for a specific cause of idiopathic noncirrhotic portal hypertension. (Hepatology 2016;63:1977-1986).

Indexed as

AdolescentAmino Acid SequenceAnimalsCattleChildChild, PreschoolDNA Mutational AnalysisDogsFemaleGenes, RecessiveHomozygoteHumansHypertension, PortalInfantLiver FailureMaledeoxyguanosine kinasePhosphotransferases (Alcohol Group Acceptor)

Identifiers

PMID26874653
PMCPMC4874872
OpenAlexW2402743621

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.