Evidence map›Paper›PMID 26873592›Full record

ArticleThe EMBO journal2016

Molecular basis of ion permeability in a voltage-gated sodium channel.

Claire E Naylor, Claire Bagnéris, Paul G DeCaen, Altin Sula, Antonella Scaglione, David E Clapham, B A Wallace

Abstract read
In one paragraph

Article in The EMBO journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Preorganized Electric Fields in Voltage-Gated Sodium Channels.Chembiochem : a European journal of chemical biology · 2025
    Article
  6. Review
  7. Review
  8. Article
  9. Ion channel selectivity through ion-modulated changes of selectivity filter pProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  10. Article
  11. Article
  12. U(1) dynamics in neuronal activities.Scientific reports · 2022
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Claire E NaylorInstitute of Structural and Molecular Biology, Birkbeck College University of London, London, UK.
Claire BagnérisInstitute of Structural and Molecular Biology, Birkbeck College University of London, London, UK.
Paul G DeCaenDepartment of Cardiology, Howard Hughes Medical Institute Boston Children's Hospital, Boston, MA, USA Department of Neurobiology, Harvard Medical School, Boston, MA, USA.
Altin SulaInstitute of Structural and Molecular Biology, Birkbeck College University of London, London, UK.
Antonella ScaglioneDepartment of Cardiology, Howard Hughes Medical Institute Boston Children's Hospital, Boston, MA, USA Department of Neurobiology, Harvard Medical School, Boston, MA, USA.
David E ClaphamDepartment of Cardiology, Howard Hughes Medical Institute Boston Children's Hospital, Boston, MA, USA Department of Neurobiology, Harvard Medical School, Boston, MA, USA.
B A WallaceInstitute of Structural and Molecular Biology, Birkbeck College University of London, London, UK b.wallace@mail.cryst.bbk.ac.uk.

Funding

RESEARCH METHODS IN PEDIATRICS HEART DISEASET32HL007572 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI Sarah D DE FERRANTI, Jane W. Newburger · 1985 to 2026
$13.0M
The genetic identity of the primary cilia ion channels of kidney collecting duct cells and their regulation by internal calciumR00DK106655 · NIDDK · NORTHWESTERN UNIVERSITY AT CHICAGO · PI DECAEN, PAUL GREGORY · 2017 to 2019
$742k
The genetic identity of the primary cilia ion channels of kidney collecting duct cells and their regulation by internal calciumK99DK106655 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI DECAEN, PAUL GREGORY · 2015 to 2016
$182k
Biotechnology and Biological Sciences Research Council BB/H01070XBiotechnology and Biological Sciences Research Council BB/L006790Biotechnology and Biological Sciences Research Council BB/L02625NHLBI NIH HHS T32 HL007572NHLBI NIH HHS T32-HL007572NIDDK NIH HHS K99 DK106655NIDDK NIH HHS R00 DK106655
6 · The paper itself

Abstract

Voltage-gated sodium channels are essential for electrical signalling across cell membranes. They exhibit strong selectivities for sodium ions over other cations, enabling the finely tuned cascade of events associated with action potentials. This paper describes the ion permeability characteristics and the crystal structure of a prokaryotic sodium channel, showing for the first time the detailed locations of sodium ions in the selectivity filter of a sodium channel. Electrostatic calculations based on the structure are consistent with the relative cation permeability ratios (Na(+) ≈ Li(+) ≫ K(+), Ca(2+), Mg(2+)) measured for these channels. In an E178D selectivity filter mutant constructed to have altered ion selectivities, the sodium ion binding site nearest the extracellular side is missing. Unlike potassium ions in potassium channels, the sodium ions in these channels appear to be hydrated and are associated with side chains of the selectivity filter residues, rather than polypeptide backbones.

Indexed as

AlphaproteobacteriaBacterial ProteinsBinding SitesCationsCrystallography, X-RayGlutamic AcidHEK293 CellsHumansIon Channel GatingModels, MolecularMutationPatch-Clamp TechniquesPermeabilityProtein ConformationSodiumSodium ChannelsBacterial ProteinsCationsGlutamic AcidSodiumSodium Channelscrystal structureelectrophysiologyion permeabilitysodium channel

Identifiers

PMID26873592
PMCPMC4972137

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.