Evidence map›Paper›PMID 26873322›Full record

ArticleApplied and environmental microbiology2016

Alpha- and Gammaproteobacterial Methanotrophs Codominate the Active Methane-Oxidizing Communities in an Acidic Boreal Peat Bog.

Kaitlin C Esson, Xueju Lin, Deepak Kumaresan, Jeffrey P Chanton, J Colin Murrell, Joel E Kostka

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Microorganisms · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Prospecting the significance of methane-utilizing bacteria in agriculture.World journal of microbiology & biotechnology · 2022
    Review
  12. Article
  13. Article
  14. Spatial Variation ofPlants (Basel, Switzerland) · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Frontiers in microbiology · 2021
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Kaitlin C EssonSchool of Biology, Georgia Institute of Technology, Atlanta, Georgia, USA.
Xueju LinSchool of Biology, Georgia Institute of Technology, Atlanta, Georgia, USA.
Deepak KumaresanSchool of Earth and Environment, University of Western Australia, Crawley, WA, Australia.
Jeffrey P ChantonEarth, Ocean, and Atmospheric Science, Florida State University, Tallahassee, Florida, USA.
J Colin MurrellSchool of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich, United Kingdom.
Joel E KostkaSchool of Biology, Georgia Institute of Technology, Atlanta, Georgia, USA joel.kostka@biology.gatech.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The objective of this study was to characterize metabolically active, aerobic methanotrophs in an ombrotrophic peatland in the Marcell Experimental Forest, in Minnesota. Methanotrophs were investigated in the field and in laboratory incubations using DNA-stable isotope probing (SIP), expression studies on particulate methane monooxygenase (pmoA) genes, and amplicon sequencing of 16S rRNA genes. Potential rates of oxidation ranged from 14 to 17 μmol of CH4g dry weight soil(-1)day(-1) Within DNA-SIP incubations, the relative abundance of methanotrophs increased from 4% in situ to 25 to 36% after 8 to 14 days. Phylogenetic analysis of the(13)C-enriched DNA fractions revealed that the active methanotrophs were dominated by the genera Methylocystis(type II;Alphaproteobacteria),Methylomonas, and Methylovulum(both, type I;Gammaproteobacteria). In field samples, a transcript-to-gene ratio of 1 to 2 was observed for pmoA in surface peat layers, which attenuated rapidly with depth, indicating that the highest methane consumption was associated with a depth of 0 to 10 cm. Metagenomes and sequencing of cDNA pmoA amplicons from field samples confirmed that the dominant active methanotrophs were Methylocystis and Methylomonas Although type II methanotrophs have long been shown to mediate methane consumption in peatlands, our results indicate that members of the genera Methylomonas and Methylovulum(type I) can significantly contribute to aerobic methane oxidation in these ecosystems.

Indexed as

BiotaEnvironmental MicrobiologyWetlandsAerobiosisAlphaproteobacteriaCluster AnalysisDNA, BacterialDNA, RibosomalGammaproteobacteriaMetagenomeMethaneMinnesotaOxidation-ReductionOxygenasesPhylogenyRNA, Ribosomal, 16SDNA, BacterialDNA, RibosomalMethanemethane monooxygenaseOxygenasesRNA, Ribosomal, 16S

Identifiers

PMID26873322
PMCPMC4959502

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.