Evidence map›Paper›PMID 26873319›Full record

ArticleApplied and environmental microbiology2016

SaxA-Mediated Isothiocyanate Metabolism in Phytopathogenic Pectobacteria.

Cornelia U Welte, Jamila F Rosengarten, Rob M de Graaf, Mike S M Jetten

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 38 citations in OpenAlex.

  1. Review
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  11. Populations of the Parasitic PlantFrontiers in plant science · 2020
    Article
  12. The Microbial Diversity of Cabbage PestFrontiers in microbiology · 2020
    Article
  13. Article
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  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Cornelia U WelteDepartment of Microbiology, Soehngen Institute of Anaerobic Microbiology, Radboud University, Nijmegen, The Netherlands c.welte@science.ru.nl.ORCID http://orcid.org/0000-0002-1568-8878
Jamila F RosengartenDepartment of Microbiology, Soehngen Institute of Anaerobic Microbiology, Radboud University, Nijmegen, The Netherlands.
Rob M de GraafDepartment of Microbiology, Soehngen Institute of Anaerobic Microbiology, Radboud University, Nijmegen, The Netherlands.
Mike S M JettenDepartment of Microbiology, Soehngen Institute of Anaerobic Microbiology, Radboud University, Nijmegen, The Netherlands.
Radboud University Nijmegen · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pectobacteria are devastating plant pathogens that infect a large variety of crops, including members of the family Brassicaceae. To infect cabbage crops, these plant pathogens need to overcome the plant's antibacterial defense mechanisms, where isothiocyanates are liberated by hydrolysis of glucosinolates. Here, we found that a Pectobacterium isolate from the gut of cabbage root fly larvae was particularly resistant to isothiocyanate and even seemed to benefit from the abundant Brassica root metabolite 2-phenylethyl isothiocyanate as a nitrogen source in an ecosystem where nitrogen is scarce. The Pectobacterium isolate harbored a naturally occurring mobile plasmid that contained a sax operon. We hypothesized that SaxA was the enzyme responsible for the breakdown of 2-phenylethyl isothiocyanate. Subsequently, we heterologously produced and purified the SaxA protein and characterized the recombinant enzyme. It hydrolyzed 2-phenylethyl isothiocyanate to yield the products carbonyl sulfide and phenylethylamine. It was also active toward another aromatic isothiocyanate but hardly toward aliphatic isothiocyanates. It belongs to the class B metal-dependent beta-lactamase fold protein family but was not, however, able to hydrolyze beta-lactam antibiotics. We discovered that several copies of the saxA gene are widespread in full and draft Pectobacterium genomes and therefore hypothesize that SaxA might be a new pathogenicity factor of the genus Pectobacterium, possibly compromising food preservation strategies using isothiocyanates.

Indexed as

AnimalsBacterial ProteinsBiotransformationBrassicaGastrointestinal TractIsothiocyanatesLarvaOperonPectobacteriumPlasmidsBacterial ProteinsIsothiocyanatesisothiocyanic acid

Identifiers

PMID26873319
PMCPMC4959473
OpenAlexW2254425115

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.