Evidence map›Paper›PMID 26873317›Full record

ArticleApplied and environmental microbiology2016

Activities of Secreted Aryl Alcohol Quinone Oxidoreductases from Pycnoporus cinnabarinus Provide Insights into Fungal Degradation of Plant Biomass.

Yann Mathieu, Francois Piumi, Richard Valli, Juan Carro Aramburu, Patricia Ferreira, Craig B Faulds, Eric Record

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
13.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 66 citations in OpenAlex.

  1. Review
  2. Article
  3. Substrate specificity mapping of fungal CAZy AA3_2 oxidoreductases.Biotechnology for biofuels and bioproducts · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. A Putative Lignin Copper Oxidase fromJournal of fungi (Basel, Switzerland) · 2021
    Article
  11. Genome and Secretome Analysis ofMicroorganisms · 2021
    Article
  12. Article
  13. Pecularities and applications of aryl-alcohol oxidases from fungi.Applied microbiology and biotechnology · 2021
    Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Oxidoreductases and Reactive Oxygen Species in Conversion of Lignocellulosic Biomass.Microbiology and molecular biology reviews : MMBR · 2018
    Review
  19. Multiplicity of enzymatic functions in the CAZy AA3 family.Applied microbiology and biotechnology · 2018
    Review
  20. Integrative visual omics of the white-rot fungusBiotechnology for biofuels · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Yann MathieuINRA, UMR 1163 Biotechnologie des Champignons Filamenteux, Polytech Marseille, Marseille, France yann.mathieu@univ-amu.fr.
Francois PiumiINRA, UMR 1163 Biotechnologie des Champignons Filamenteux, Polytech Marseille, Marseille, France.
Richard ValliINRA, UMR 1163 Biotechnologie des Champignons Filamenteux, Polytech Marseille, Marseille, France.
Juan Carro AramburuBiotechnology for Lignocellulosic Biomass Lab, Centro de Investigaciones Biológicas, Madrid, Spain.
Patricia FerreiraDepartamento de Bioquímica y Biología Molecular y Celular, Instituto de Biocomputación y Física de Sistemas Complejos, Universidad de Zaragoza, Zaragoza, Spain.
Craig B FauldsINRA, UMR 1163 Biotechnologie des Champignons Filamenteux, Polytech Marseille, Marseille, France.
Eric RecordINRA, UMR 1163 Biotechnologie des Champignons Filamenteux, Polytech Marseille, Marseille, France.
Aix-Marseille Université · FRCentro de Investigaciones Biológicas Margarita Salas · ESUniversidad de Zaragoza · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Auxiliary activities family 3 subfamily 2 (AA3_2) from the CAZy database comprises various functions related to ligninolytic enzymes, such as fungal aryl alcohol oxidases (AAO) and glucose oxidases, both of which are flavoenzymes. The recent study of the Pycnoporus cinnabarinus CIRM BRFM 137 genome combined with its secretome revealed that four AA3_2 enzymes are secreted during biomass degradation. One of these AA3_2 enzymes, scf184803.g17, has recently been produced heterologously in Aspergillus niger Based on the enzyme's activity and specificity, it was assigned to the glucose dehydrogenases (PcinnabarinusGDH [PcGDH]). Here, we analyze the distribution of the other three AA3_2 enzymes (scf185002.g8, scf184611.g7, and scf184746.g13) to assess their putative functions. These proteins showed the highest homology with aryl alcohol oxidase from Pleurotus eryngii Biochemical characterization demonstrated that they were also flavoenzymes harboring flavin adenine dinucleotide (FAD) as a cofactor and able to oxidize a wide variety of phenolic and nonphenolic aryl alcohols and one aliphatic polyunsaturated primary alcohol. Though presenting homology with fungal AAOs, these enzymes exhibited greater efficiency in reducing electron acceptors (quinones and one artificial acceptor) than molecular oxygen and so were defined as aryl-alcohol:quinone oxidoreductases (AAQOs) with two enzymes possessing residual oxidase activity (PcAAQO2 and PcAAQO3). Structural comparison of PcAAQO homology models with P. eryngii AAO demonstrated a wider substrate access channel connecting the active-site cavity to the solvent, explaining the absence of activity with molecular oxygen. Finally, the ability of PcAAQOs to reduce radical intermediates generated by laccase from P. cinnabarinus was demonstrated, shedding light on the ligninolytic system of this fungus.

Indexed as

Alcohol OxidoreductasesBiomassBiotransformationCoenzymesFlavin-Adenine DinucleotideFlavoproteinsLigninModels, MolecularProtein ConformationPycnoporusQuinonesSequence Homology, Amino AcidSubstrate SpecificityAlcohol Oxidoreductasesaryl-alcohol oxidaseCoenzymesFlavin-Adenine DinucleotideFlavoproteinsLigninlignocelluloseQuinones

Identifiers

PMID26873317
PMCPMC4959486
OpenAlexW2414192787

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.