Evidence map›Paper›PMID 26872775›Full record

ArticleGenome biology and evolution2016

Evolutionary Changes on the Way to Clathrin-Mediated Endocytosis in Animals.

Mykola Dergai, Anton Iershov, Olga Novokhatska, Serhii Pankivskyi, Alla Rynditch

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.8field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. PTEN: Bridging Endocytosis and Signaling.Cold Spring Harbor perspectives in medicine · 2020
    Review
  5. The MUC6/AP2A2 Locus and Its Relevance to Alzheimer's Disease: A Review.Journal of neuropathology and experimental neurology · 2020
    Review
  6. Article
  7. Article
  8. On the existence of endocytosis driven by membrane phase separations.Biochimica et biophysica acta. Biomembranes · 2020
    Review
  9. Review
  10. Article
  11. Regulation of Clathrin-Mediated Endocytosis.Annual review of biochemistry · 2018
    Review
  12. Article
  13. Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Mykola DergaiDepartment of Functional Genomics, Institute of Molecular Biology and Genetics, NASU, Kyiv, Ukraine m.v.dergai@imbg.org.ua.
Anton IershovDepartment of Biosynthesis of Nucleic Acids, Institute of Molecular Biology and Genetics, NASU, Kyiv, Ukraine.
Olga NovokhatskaDepartment of Functional Genomics, Institute of Molecular Biology and Genetics, NASU, Kyiv, Ukraine.
Serhii PankivskyiDepartment of Functional Genomics, Institute of Molecular Biology and Genetics, NASU, Kyiv, Ukraine.
Alla RynditchDepartment of Functional Genomics, Institute of Molecular Biology and Genetics, NASU, Kyiv, Ukraine.
Institute of Molecular Biology and Genetics · UA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Endocytic pathways constitute an evolutionarily ancient system that significantly contributed to the eukaryotic cell architecture and to the diversity of cell type-specific functions and signaling cascades, in particular of metazoans. Here we used comparative proteomic studies to analyze the universal internalization route in eukaryotes, clathrin-mediated endocytosis (CME), to address the issues of how this system evolved and what are its specific features. Among 35 proteins crucially required for animal CME, we identified a subset of 22 proteins common to major eukaryotic branches and 13 gradually acquired during evolution. Based on exploration of structure-function relationship between conserved homologs in sister, distantly related and early diverged branches, we identified novel features acquired during evolution of endocytic proteins on the way to animals: Elaborated way of cargo recruitment by multiple sorting proteins, structural changes in the core endocytic complex AP2, the emergence of the Fer/Cip4 homology domain-only protein/epidermal growth factor receptor substrate 15/intersectin functional complex as an additional interaction hub and activator of AP2, as well as changes in late endocytic stages due to recruitment of dynamin/sorting nexin 9 complex and involvement of the actin polymerization machinery. The evolutionary reconstruction showed the basis of the CME process and its subsequent step-by-step development. Documented changes imply more precise regulation of the pathway, as well as CME specialization for the uptake of specific cargoes and cell type-specific functions.

Indexed as

Evolution, MolecularClathrinEndocytosisEukaryotaGenetic VariationPhylogenyProteinsProteomicsStructure-Activity RelationshipClathrinProteinsclathrin-associated sorting proteinsdynamin/SNX9 complexendocytic protein interaction networkevolution of endocytic systemregulation of AP2 conformational switchscaffolding FCHO/Eps15/ITSN complex

Identifiers

PMID26872775
PMCPMC4824007
OpenAlexW2297102350

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.