ArticleGenome biology and evolution2016
A Comparative Analysis of Mitochondrial Genomes in Eustigmatophyte Algae.
Article in Genome biology and evolution, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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17 citing papers in PubMed, 37 citations in OpenAlex.
- Insights into the Phylogeny and Enigmatic Mitochondrial Biology of Eustigmatophyte Algae From Over 50 Newly Sequenced Organellar Genomes.Genome biology and evolution · 2026Article
- Charting the landscape of organellar genome evolution in eustigmatophyte algae.bioRxiv : the preprint server for biology · 2026Article
- A cryptic plastid and a novel mitochondrial plasmid inOpen biology · 2024Article
- Complete mitochondrial genome of an oleaginous microalgaMitochondrial DNA. Part B, Resources · 2024Article
- Lower Statistical Support with Larger Data Sets: Insights from the Ochrophyta Radiation.Molecular biology and evolution · 2022Article
- The complete mitochondrial genome ofFrontiers in microbiology · 2022Article
- Diatom Biodiversity and Speciation Revealed by Comparative Analysis of Mitochondrial Genomes.Frontiers in plant science · 2022Article
- Mitochondrial Genome Evolution in Pelagophyte Algae.Genome biology and evolution · 2021Article
- Unexpected mitochondrial genome diversity revealed by targeted single-cell genomics of heterotrophic flagellated protists.Nature microbiology · 2020Article
- Recent advances in understanding mitochondrial genome diversity.F1000Research · 2020Review
- Comparative analysis ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2019Article
- Morphology, Ultrastructure, and Mitochondrial Genome of the Marine Non-Photosynthetic BicosoecidMicroorganisms · 2019Article
- Plastid Genomes and Proteins Illuminate the Evolution of Eustigmatophyte Algae and Their Bacterial Endosymbionts.Genome biology and evolution · 2019Article
- Evolution of mitochondrial TAT translocases illustrates the loss of bacterial protein transport machines in mitochondria.BMC biology · 2018Article
- A gene transfer event suggests a long-term partnership between eustigmatophyte algae and a novel lineage of endosymbiotic bacteria.The ISME journal · 2018Article
- Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements.BMC genomics · 2018Article
- The plastid genome of some eustigmatophyte algae harbours a bacteria-derived six-gene cluster for biosynthesis of a novel secondary metabolite.Open biology · 2016Article
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Authors and funding
7 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Eustigmatophyceae (Ochrophyta, Stramenopiles) is a small algal group with species of the genus Nannochloropsis being its best studied representatives. Nuclear and organellar genomes have been recently sequenced for several Nannochloropsis spp., but phylogenetically wider genomic studies are missing for eustigmatophytes. We sequenced mitochondrial genomes (mitogenomes) of three species representing most major eustigmatophyte lineages, Monodopsis sp. MarTras21, Vischeria sp. CAUP Q 202 and Trachydiscus minutus, and carried out their comparative analysis in the context of available data from Nannochloropsis and other stramenopiles, revealing a number of noticeable findings. First, mitogenomes of most eustigmatophytes are highly collinear and similar in the gene content, but extensive rearrangements and loss of three otherwise ubiquitous genes happened in the Vischeria lineage; this correlates with an accelerated evolution of mitochondrial gene sequences in this lineage. Second, eustigmatophytes appear to be the only ochrophyte group with the Atp1 protein encoded by the mitogenome. Third, eustigmatophyte mitogenomes uniquely share a truncated nad11 gene encoding only the C-terminal part of the Nad11 protein, while the N-terminal part is encoded by a separate gene in the nuclear genome. Fourth, UGA as a termination codon and the cognate release factor mRF2 were lost from mitochondria independently by the Nannochloropsis and T. minutus lineages. Finally, the rps3 gene in the mitogenome of Vischeria sp. is interrupted by the UAG codon, but the genome includes a gene for an unusual tRNA with an extended anticodon loop that we speculate may serve as a suppressor tRNA to properly decode the rps3 gene.
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