Evidence map›Paper›PMID 26872387›Full record

ArticlePLoS neglected tropical diseases2016

Population Genetics of Plasmodium vivax in Four Rural Communities in Central Vietnam.

Nguyen Van Hong, Christopher Delgado-Ratto, Pham Vinh Thanh, Peter Van den Eede, Pieter Guetens, Nguyen Thi Huong Binh, Bui Quang Phuc, Tran Thanh Duong, Jean Pierre Van Geertruyden, Umberto D'Alessandro and 2 more

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 46 citations in OpenAlex.

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  13. Intra-host dynamics of co-infecting parasite genotypes in asymptomatic malaria patients.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2018
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  15. Genetic Variability ofThe American journal of tropical medicine and hygiene · 2018
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  16. Review
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  18. Population Genetic Analysis ofFrontiers in genetics · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 3 countries.

Nguyen Van HongNational Institute of Malariology, Parasitology and Entomology (NIMPE), Hanoi, Vietnam.
Christopher Delgado-RattoInternational Health Unit, Faculty of Medicine, University of Antwerp, Belgium.
Pham Vinh ThanhNational Institute of Malariology, Parasitology and Entomology (NIMPE), Hanoi, Vietnam.
Peter Van den EedeInstitute of Tropical Medicine (ITM), Antwerp, Belgium.
Pieter GuetensInstitute of Tropical Medicine (ITM), Antwerp, Belgium.
Nguyen Thi Huong BinhNational Institute of Malariology, Parasitology and Entomology (NIMPE), Hanoi, Vietnam.
Bui Quang PhucNational Institute of Malariology, Parasitology and Entomology (NIMPE), Hanoi, Vietnam.
Tran Thanh DuongNational Institute of Malariology, Parasitology and Entomology (NIMPE), Hanoi, Vietnam.
Jean Pierre Van GeertruydenInternational Health Unit, Faculty of Medicine, University of Antwerp, Belgium.
Umberto D'AlessandroInstitute of Tropical Medicine (ITM), Antwerp, Belgium.
Annette ErhartInstitute of Tropical Medicine (ITM), Antwerp, Belgium.
Anna Rosanas-UrgellInstitute of Tropical Medicine (ITM), Antwerp, Belgium.
Instituut voor Tropische Geneeskunde · BENational Institute of Malariology, Parasitology and Entomology · VNUniversity of Antwerp · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe burden of malaria in Vietnam has drastically reduced, prompting the National Malaria Control Program to officially engage in elimination efforts. Plasmodium vivax is becoming increasingly prevalent, remaining a major problem in the country's central and southern provinces. A better understanding of P. vivax genetic diversity and structure of local parasite populations will provide baseline data for the evaluation and improvement of current efforts for control and elimination. The aim of this study was to examine the population genetics and structure of P. vivax isolates from four communities in Tra Leng commune, Nam Tra My district in Quang Nam, Central Vietnam. METHODOLOGY/PRINCIPAL

findingsP. vivax mono infections collected from 234 individuals between April 2009 and December 2010 were successfully analyzed using a panel of 14 microsatellite markers. Isolates displayed moderate genetic diversity (He = 0.68), with no significant differences between study communities. Polyclonal infections were frequent (71.4%) with a mean multiplicity of infection of 1.91 isolates/person. Low but significant genetic differentiation (FST value from -0.05 to 0.18) was observed between the community across the river and the other communities. Strong linkage disequilibrium ([Formula: see text] = 0.113, p < 0.001) was detected across all communities, suggesting gene flow within and among them. Using multiple approaches, 101 haplotypes were grouped into two genetic clusters, while 60.4% of haplotypes were admixed. CONCLUSIONS/SIGNIFICANCE: In this area of Central Vietnam, where malaria transmission has decreased significantly over the past decade, there was moderate genetic diversity and high occurrence of polyclonal infections. Local human populations have frequent social and economic interactions that facilitate gene flow and inbreeding among parasite populations, while decreasing population structure. Findings provide important information on parasites populations circulating in the study area and are relevant to current malaria elimination efforts.

Indexed as

Genetic VariationAdolescentAdultChildChild, PreschoolFemaleGenotypeHumansMalaria, VivaxMaleMicrosatellite RepeatsMolecular Sequence DataPhylogenyPlasmodium vivaxRural PopulationVietnam

Identifiers

PMID26872387
PMCPMC4752448
OpenAlexW2264802137

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.