Evidence map›Paper›PMID 26872041›Full record

ArticleThe ISME journal2016

Integrated multi-omics analyses reveal the biochemical mechanisms and phylogenetic relevance of anaerobic androgen biodegradation in the environment.

Fu-Chun Yang, Yi-Lung Chen, Sen-Lin Tang, Chang-Ping Yu, Po-Hsiang Wang, Wael Ismail, Chia-Hsiang Wang, Jiun-Yan Ding, Cheng-Yu Yang, Chia-Ying Yang and 1 more

Open access · greenAbstract read
In one paragraph

Article in The ISME journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 65 citations in OpenAlex.

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  11. Retroconversion of estrogens into androgens by bacteria via a cobalamin-mediated methylation.Proceedings of the National Academy of Sciences of the United States of America · 2020
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  19. A Community Multi-Omics Approach towards the Assessment of Surface Water Quality in an Urban River System.International journal of environmental research and public health · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Fu-Chun YangBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.
Yi-Lung ChenBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.
Sen-Lin TangBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.
Chang-Ping YuGraduate Institute of Environmental Engineering, National Taiwan University, Taipei, Taiwan.
Po-Hsiang WangBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.
Wael IsmailEnvironmental Biotechnology Program, Life Sciences Department, College of Graduate Studies, Arabian Gulf University, Manama, Kingdom of Bahrain.
Chia-Hsiang WangBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.
Jiun-Yan DingBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.ORCID 0000-0002-1079-5834
Cheng-Yu YangBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.
Chia-Ying YangBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.
Yin-Ru ChiangBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.
Biodiversity Research Center, Academia Sinica · TWNational Taiwan Normal University · TWArabian Gulf University · BHNational Taiwan University · TWUniversity of Toronto · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Steroid hormones, such as androgens, are common surface-water contaminants. However, literature on the ecophysiological relevance of steroid-degrading organisms in the environment, particularly in anoxic ecosystems, is extremely limited. We previously reported that Steroidobacter denitrificans anaerobically degrades androgens through the 2,3-seco pathway. In this study, the genome of Sdo. denitrificans was completely sequenced. Transcriptomic data revealed gene clusters that were distinctly expressed during anaerobic growth on testosterone. We isolated and characterized the bifunctional 1-testosterone hydratase/dehydrogenase, which is essential for anaerobic degradation of steroid A-ring. Because of apparent substrate preference of this molybdoenzyme, corresponding genes, along with the signature metabolites of the 2,3-seco pathway, were used as biomarkers to investigate androgen biodegradation in the largest sewage treatment plant in Taipei, Taiwan. Androgen metabolite analysis indicated that denitrifying bacteria in anoxic sewage use the 2,3-seco pathway to degrade androgens. Metagenomic analysis and PCR-based functional assays showed androgen degradation in anoxic sewage by Thauera spp. through the action of 1-testosterone hydratase/dehydrogenase. Our integrative 'omics' approach can be used for culture-independent investigations of the microbial degradation of structurally complex compounds where isotope-labeled substrates are not easily available.

Indexed as

GenomicsAnaerobiosisAndrogensBiodegradation, EnvironmentalGammaproteobacteriaGene Expression ProfilingGenome, BacterialPhylogenySequence Analysis, DNASewageTaiwanTestosterone1-testosteroneAndrogensSewageTestosterone

Identifiers

PMID26872041
PMCPMC5029156
OpenAlexW2270670832

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.