Evidence map›Paper›PMID 26871580›Full record

ArticlePloS one2016

An Integrated Metabolomic and Microbiome Analysis Identified Specific Gut Microbiota Associated with Fecal Cholesterol and Coprostanol in Clostridium difficile Infection.

Vijay C Antharam, Daniel C McEwen, Timothy J Garrett, Aaron T Dossey, Eric C Li, Andrew N Kozlov, Zhubene Mesbah, Gary P Wang

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 111 citations in OpenAlex.

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  10. Biliary microbiome and gallstones: A silent friendship.World journal of gastrointestinal surgery · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Vijay C AntharamDepartment of Medicine, Division of Infectious Diseases and Global Medicine, University of Florida, Gainesville, FL, United States of America.
Daniel C McEwenDepartment of Biosciences, Minnesota State University Moorhead, Moorhead, MN, United States of America.
Timothy J GarrettDepartment of Pathology, Immunology, and Laboratory Medicine, University of Florida, Gainesville, FL, United States of America.
Aaron T DosseyAll Things Bugs LLC, Athens, GA, United States of America.
Eric C LiDepartment of Medicine, Division of Infectious Diseases and Global Medicine, University of Florida, Gainesville, FL, United States of America.
Andrew N KozlovDepartment of Medicine, Division of Infectious Diseases and Global Medicine, University of Florida, Gainesville, FL, United States of America.
Zhubene MesbahDepartment of Medicine, Division of Infectious Diseases and Global Medicine, University of Florida, Gainesville, FL, United States of America.
Gary P WangDepartment of Medicine, Division of Infectious Diseases and Global Medicine, University of Florida, Gainesville, FL, United States of America.
University of Florida · USAll Things Bugs (United States) · USMinnesota State University Moorhead · US

Funding

Using social networks to map and evaluate team science across CTSA hubsUL1TR001427 · NCATS · UNIVERSITY OF FLORIDA · PI MITCHELL, DUANE A. · 2015 to 2024
$37.2M
UF CLINICAL AND TRANSLATIONAL SCIENCE AWARDUL1RR029890 · NCRR · UNIVERSITY OF FLORIDA · PI NELSON, DAVID R · 2009 to 2011
$14.4M
UF Clinical and Translational Science AwardUL1TR000064 · NCATS · UNIVERSITY OF FLORIDA · PI NELSON, DAVID R · 2012 to 2014
$12.2M
Southeast Resource Center for Integrated Metabolomics (SECIM)U24DK097209 · NIDDK · UNIVERSITY OF FLORIDA · PI EDISON, ARTHUR S, YOST, RICHARD A. · 2013 to 2017
$9.2M
HCV diversity and resistance analyzed by DNA bar coding and pyrosequencingK08AI077713 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI WANG, GARY P. · 2009 to 2012
$527k
NCATS NIH HHS UL1 TR001427NCRR NIH HHS UL1 RR029890NCRR NIH HHS UL1RR029890NIAID NIH HHS K08 AI077713NIAID NIH HHS KO8 AI077713NIDDK NIH HHS U24 DK097209
6 · The paper itself

Abstract

Clostridium difficile infection (CDI) is characterized by dysbiosis of the intestinal microbiota and a profound derangement in the fecal metabolome. However, the contribution of specific gut microbes to fecal metabolites in C. difficile-associated gut microbiome remains poorly understood. Using gas-chromatography mass spectrometry (GC-MS) and 16S rRNA deep sequencing, we analyzed the metabolome and microbiome of fecal samples obtained longitudinally from subjects with Clostridium difficile infection (n = 7) and healthy controls (n = 6). From 155 fecal metabolites, we identified two sterol metabolites at >95% match to cholesterol and coprostanol that significantly discriminated C. difficile-associated gut microbiome from healthy microbiota. By correlating the levels of cholesterol and coprostanol in fecal extracts with 2,395 bacterial operational taxonomic units (OTUs) determined by 16S rRNA sequencing, we identified 63 OTUs associated with high levels of coprostanol and 2 OTUs correlated with low coprostanol levels. Using indicator species analysis (ISA), 31 of the 63 coprostanol-associated bacteria correlated with health, and two Veillonella species were associated with low coprostanol levels that correlated strongly with CDI. These 65 bacterial taxa could be clustered into 12 sub-communities, with each community containing a consortium of organisms that co-occurred with one another. Our studies identified 63 human gut microbes associated with cholesterol-reducing activities. Given the importance of gut bacteria in reducing and eliminating cholesterol from the GI tract, these results support the recent finding that gut microbiome may play an important role in host lipid metabolism.

Indexed as

Gastrointestinal MicrobiomeAdultAgedCholestanolCholesterolClostridioides difficileEnterocolitis, PseudomembranousFecesFemaleGastrointestinal TractHumansMaleMetabolomeMicrobiotaMiddle AgedRNA, Ribosomal, 16SCholestanolCholesterolRNA, Ribosomal, 16S

Identifiers

PMID26871580
PMCPMC4752508
OpenAlexW2265314978

What OpenQuestion holds

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LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.