Evidence map›Paper›PMID 26870294›Full record

ArticleOncology letters2016

DNA hypermethylation of the vimentin gene inversely correlates with vimentin expression in intestinal- and diffuse-type gastric cancer.

Hui Cong, Ru-Yong Yao, Zhen-Qing Sun, Wen-Sheng Qiu, Ya-Sai Yao, Tong-Tong Feng, Chao Xin, Jun Liang, L U Yue

Open access · diamondAbstract read
In one paragraph

Article in Oncology letters, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Vimentin as a target for the treatment of COVID-19.BMJ open respiratory research · 2020
    Article
  7. Review
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Hui CongDepartment of Oncology, Affiliated Hospital of Qingdao University, Qingdao, Shandong 266003, P.R. China; Tumor Molecular and Translational Medicine Lab, Affiliated Hospital of Qingdao University, Qingdao, Shandong 266003, P.R. China.
Ru-Yong YaoCentral Laboratory, Affiliated Hospital of Qingdao University, Qingdao, Shandong 266003, P.R. China.
Zhen-Qing SunDepartment of General Surgery, Affiliated Hospital of Qingdao University, Qingdao, Shandong 266003, P.R. China.
Wen-Sheng QiuDepartment of Oncology, Affiliated Hospital of Qingdao University, Qingdao, Shandong 266003, P.R. China; Tumor Molecular and Translational Medicine Lab, Affiliated Hospital of Qingdao University, Qingdao, Shandong 266003, P.R. China.
Ya-Sai YaoDepartment of Oncology, Affiliated Hospital of Qingdao University, Qingdao, Shandong 266003, P.R. China.
Tong-Tong FengDepartment of Oncology, Affiliated Hospital of Qingdao University, Qingdao, Shandong 266003, P.R. China.
Chao XinDepartment of Oncology, Affiliated Hospital of Qingdao University, Qingdao, Shandong 266003, P.R. China.
Jun LiangDepartment of Oncology, Affiliated Hospital of Qingdao University, Qingdao, Shandong 266003, P.R. China; Tumor Molecular and Translational Medicine Lab, Affiliated Hospital of Qingdao University, Qingdao, Shandong 266003, P.R. China.
L U YueDepartment of Oncology, Affiliated Hospital of Qingdao University, Qingdao, Shandong 266003, P.R. China; Tumor Molecular and Translational Medicine Lab, Affiliated Hospital of Qingdao University, Qingdao, Shandong 266003, P.R. China.
Affiliated Hospital of Qingdao University · CNQingdao University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The vimentin gene is a hallmark of epithelial-to-mesenchymal transition and has been observed to be overexpressed in various types of tumor cell line and tissue. Previous studies have reported correlations between vimentin DNA methylation levels and subsequent vimentin expression levels in solid tumors, including breast and colorectal cancer; however, to the best of our knowledge, such a correlation has not been reported for gastric cancer (GC) using Lauren classification. Therefore, the present study aimed to quantify DNA methylation levels of the vimentin gene using quantitative (q) methylation-specific polymerase chain reaction (PCR) in intestinal-type GC cell lines (MKN-28, AGS and MKN-1), diffuse-type GC cell lines (SGC-7901, SNU-5 and KATO III), the GES-1 immortalized human non-neoplastic gastric epithelial cell line, as well as in tumor and paratumor normal tissue samples. Furthermore, the present study analyzed the messenger RNA expression of the vimentin gene in these cell lines and tissues by reverse transcription-qPCR. A comparison of the clinicopathological features was conducted between patients, grouped according to the Lauren classification. The present study identified that the vimentin promoter region was hypermethylated in all GC cell lines and tumor tissue samples when compared with immortalized normal gastric epithelial cells and paratumor normal tissues. In addition, vimentin promoter methylation levels were observed to be higher in intestinal-type cell lines when compared with those of diffuse-type lines and tissues. Correspondingly, vimentin expression levels were lower in intestinal-type gastric cell lines compared with those of diffuse-type cell lines and tissues, and were lowest in the non-neoplastic gastric cell line and paratumor normal tissues. Patients with diffuse-type GC were on average younger (P=0.023), and exhibited higher tumor (P=0.020), node (P=0.032) and TNM classification of malignant tumor stage (P=0.039) than those with intestinal-type GC. Following treatment of AGS cells (which demonstrated the highest methylation level of the vimentin gene) with 5-aza-2'-deoxycytidine, vimentin expression was restored significantly. Thus, the present study revealed that vimentin promoter methylation levels are inversely correlated with vimentin expression levels in GC (according to Lauren classification). High levels of methylation in the vimentin gene promoter region may be involved in carcinogenesis and the development of GC, and may provide a novel molecular classification for GC.

Indexed as

DNA methylationepigeneticgastric cancerLauren classificationvimentin

Identifiers

PMID26870294
PMCPMC4727186
OpenAlexW2176765282

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.