Evidence map›Paper›PMID 26870056›Full record

ArticleFrontiers in plant science2016

Changes in the Proteome of Xylem Sap in Brassica oleracea in Response to Fusarium oxysporum Stress.

Zijing Pu, Yoko Ino, Yayoi Kimura, Asumi Tago, Motoki Shimizu, Satoshi Natsume, Yoshitaka Sano, Ryo Fujimoto, Kentaro Kaneko, Daniel J Shea and 4 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
11.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 47 citations in OpenAlex.

  1. Advanced breeding techniques inPlant signaling & behavior · 2026
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  5. Identification of Diverse Stress-Responsive Xylem Sap Peptides in Soybean.International journal of molecular sciences · 2022
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Biocontrol byFrontiers in plant science · 2020
    Review
  14. Saudi journal of biological sciences · 2019
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 1 country.

Zijing PuGraduate School of Science and Technology, Niigata University Niigata, Japan.
Yoko InoAdvanced Medical Research Center, Yokohama City University Kanazawa, Japan.
Yayoi KimuraAdvanced Medical Research Center, Yokohama City University Kanazawa, Japan.
Asumi TagoGraduate School of Science and Technology, Niigata University Niigata, Japan.
Motoki ShimizuGraduate School of Science and Technology, Niigata UniversityNiigata, Japan; Iwate Biotechnology Research CenterKitakami, Japan.
Satoshi NatsumeIwate Biotechnology Research Center Kitakami, Japan.
Yoshitaka SanoGraduate School of Science and Technology, Niigata University Niigata, Japan.
Ryo FujimotoGraduate School of Agricultural Science, Kobe University Kobe, Japan.
Kentaro KanekoGraduate School of Science and Technology, Niigata University Niigata, Japan.
Daniel J SheaGraduate School of Science and Technology, Niigata University Niigata, Japan.
Eigo FukaiGraduate School of Science and Technology, Niigata University Niigata, Japan.
Shin-Ichi FujiFaculty of Bioresource Sciences, Akita Prefectural University Akita, Japan.
Hisashi HiranoAdvanced Medical Research Center, Yokohama City University Kanazawa, Japan.
Keiichi OkazakiGraduate School of Science and Technology, Niigata University Niigata, Japan.
Niigata University · JPIwate Biotechnology Research Center · JPYokohama City University Medical Center · JPAkita Prefectural University · JPKobe University · JPYokohama City University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fusarium oxysporum f.sp. conlutinans (Foc) is a serious root-invading and xylem-colonizing fungus that causes yellowing in Brassica oleracea. To comprehensively understand the interaction between F. oxysporum and B. oleracea, composition of the xylem sap proteome of the non-infected and Foc-infected plants was investigated in both resistant and susceptible cultivars using liquid chromatography-tandem mass spectrometry (LC-MS/MS) after in-solution digestion of xylem sap proteins. Whole genome sequencing of Foc was carried out and generated a predicted Foc protein database. The predicted Foc protein database was then combined with the public B. oleracea and B. rapa protein databases downloaded from Uniprot and used for protein identification. About 200 plant proteins were identified in the xylem sap of susceptible and resistant plants. Comparison between the non-infected and Foc-infected samples revealed that Foc infection causes changes to the protein composition in B. oleracea xylem sap where repressed proteins accounted for a greater proportion than those of induced in both the susceptible and resistant reactions. The analysis on the proteins with concentration change > = 2-fold indicated a large portion of up- and down-regulated proteins were those acting on carbohydrates. Proteins with leucine-rich repeats and legume lectin domains were mainly induced in both resistant and susceptible system, so was the case of thaumatins. Twenty-five Foc proteins were identified in the infected xylem sap and 10 of them were cysteine-containing secreted small proteins that are good candidates for virulence and/or avirulence effectors. The findings of differential response of protein contents in the xylem sap between the non-infected and Foc-infected samples as well as the Foc candidate effectors secreted in xylem provide valuable insights into B. oleracea-Foc interactions.

Indexed as

Brassica oleraceaF. oxysporum f. sp. conglutinansproteomicsxylem sap

Identifiers

PMID26870056
PMCPMC4734173
OpenAlexW2253608954

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.