Evidence map›Paper›PMID 26870017›Full record

ArticleFrontiers in microbiology2016

Comparative Genomic Analysis of the ICESa2603 Family ICEs and Spread of erm(B)- and tet(O)-Carrying Transferable 89K-Subtype ICEs in Swine and Bovine Isolates in China.

Jinhu Huang, Yuan Liang, Dawei Guo, Kexin Shang, Lin Ge, Jam Kashif, Liping Wang

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
  2. Article
  3. Characterization of a novel composite ICE inFrontiers in microbiology · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Comparative Genome Analysis of TwoAnimals : an open access journal from MDPI · 2024
    Article
  8. First WGS Characterization ofTransboundary and emerging diseases · 2024
    Article
  9. International journal of molecular sciences · 2023
    Article
  10. Article
  11. Article
  12. New Characterization of Multi-Drug Resistance ofAntibiotics (Basel, Switzerland) · 2023
    Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Emergence of aFrontiers in veterinary science · 2021
    Article
  19. Horizontal Transfer of DifferentFrontiers in microbiology · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jinhu HuangCollege of Veterinary Medicine, Nanjing Agricultural University Nanjing, China.
Yuan LiangCollege of Veterinary Medicine, Nanjing Agricultural University Nanjing, China.
Dawei GuoCollege of Veterinary Medicine, Nanjing Agricultural University Nanjing, China.
Kexin ShangCollege of Veterinary Medicine, Nanjing Agricultural University Nanjing, China.
Lin GeCollege of Veterinary Medicine, Nanjing Agricultural University Nanjing, China.
Jam KashifDepartment of Veterinary Pharmacology, Sindh Agricultural University Tandojam, Pakistan.
Liping WangCollege of Veterinary Medicine, Nanjing Agricultural University Nanjing, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Integrative and conjugative elements (ICEs) of the ICESa2603 family have been isolated from several species of Streptococcus spp.; however, the comparative genomic and evolutionary analyses of these particular ICEs are currently only at their initial stages. By investigating 13 ICEs of the ICESa2603 family and two ICESa2603 family-like ICEs derived from diverse hosts and locations, we have determined that ICEs comprised a backbone of 30 identical syntenic core genes and accessory genes that were restricted to the intergenic sites or the 3'-end of the non-conserved domain of core genes to maintain its function. ICESa2603 family integrase IntICE Sa 2603 specifically recognized a 15-bp att sequence (TTATTTAAGAGTAAC) at the 3'-end of rplL, which was highly conserved in genus Streptococcus. Phylogenetic analyses suggest that extensive recombination/insertion and the occurrence of a hybrid/mosaic in the ICESa2603 family were responsible for the significant increase in ICE diversity, thereby broadening its host range. Approximately 42.5 and 38.1% of the tested Streptococcus suis and Streptococcus agalactiae clinical isolates respectively contained ICESa2603 family Type IV secretion system (T4SS) genes, and 80.5 and 62.5% of which also respectively carried int ICE Sa 2603, indicating that ICESa2603 family is widely distributed across these bacteria. Sequencing and conjugation transfer of a novel sequence type ST303 clinical S. suis isolate HB1011 demonstrated that the 89K-subtype ICESsuHB1011 retained its transferrable function, thereby conferring tetracycline and macrolide resistance.

Indexed as

antimicrobial resistanceerm(B)horizontal gene transferICESa2603 familyintegrative and conjugative elementsStreptococcus agalactiaeStreptococcus suistet(O)

Identifiers

PMID26870017
PMCPMC4735348

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.