Evidence map›Paper›PMID 26869617›Full record

ArticleG3 (Bethesda, Md.)2016

Efficient Genome Editing in Chicken DF-1 Cells Using the CRISPR/Cas9 System.

Yichun Bai, Linjie He, Pengcheng Li, Kun Xu, Simin Shao, Chonghua Ren, Zhongtian Liu, Zehui Wei, Zhiying Zhang

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Gene editing in birds takes flight.Mammalian genome : official journal of the International Mammalian Genome Society · 2017
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Yichun BaiCollege of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, 712100, China.
Linjie HeCollege of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, 712100, China.
Pengcheng LiCollege of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, 712100, China.
Kun XuCollege of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, 712100, China.
Simin ShaoCollege of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, 712100, China.
Chonghua RenCollege of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, 712100, China.
Zhongtian LiuCollege of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, 712100, China.
Zehui WeiCollege of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, 712100, China Zhangzhy@nwsuaf.edu.cn 553527211@126.com.
Zhiying ZhangCollege of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, 712100, China Zhangzhy@nwsuaf.edu.cn 553527211@126.com.
Northwest A&F University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In recent years, genome engineering technology has provided unprecedented opportunities for site-specific modification of biological genomes. Clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated (Cas) 9 is one such means that can target a specific genome locus. It has been applied in human cells and many other organisms. Meanwhile, to efficiently enrich targeted cells, several surrogate systems have also been developed. However, very limited information exists on the application of CRISPR/Cas9 in chickens. In this study, we employed the CRISPR/Cas9 system to induce mutations in the peroxisome proliferator-activated receptor-γ (PPAR-γ), ATP synthase epsilon subunit (ATP5E), and ovalbumin (OVA) genes in chicken DF-1 cells. The results of T7E1 assays showed that the mutation rate at the three different loci was 0.75%, 0.5%, and 3.0%, respectively. In order to improve the mutation efficiency, we used the Puro(R) gene for efficient enrichment of genetically modified cells with the surrogate reporter system. The mutation rate, as assessed via the T7E1 assay, increased to 60.7%, 61.3%, and 47.3%, and subsequent sequence analysis showed that the mutation efficiency increased to 94.7%, 95%, and 95%, respectively. In addition, there were no detectable off-target mutations in three potential off-target sites using the T7E1 assay. As noted above, the CRISPR/Cas9 system is a robust tool for chicken genome editing.

Indexed as

CRISPR-Cas SystemsGene EditingAnimalsBase SequenceCell LineChickensGene ExpressionGene OrderGenes, ReporterGenetic EngineeringGenetic VectorsMutationchicken DF-1 cellCRISPR/Cas9 systemGenomic SelectionGenPredmutant efficiencyoff-targetShared data resourcesurrogate reporter

Identifiers

PMID26869617
PMCPMC4825661
OpenAlexW2320371188

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.