Evidence map›Paper›PMID 26869260›Full record

ReviewGenetica2016

Interstitial telomeric sites and Robertsonian translocations in species of Ipheion and Nothoscordum (Amaryllidaceae).

Gustavo Souza, Andre L L Vanzela, Orfeo Crosa, Marcelo Guerra

Abstract readReview
PubMed Publisher
In one paragraph

Review in Genetica, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
5.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Chromosomal dynamics inFrontiers in plant science · 2023
    Article
  4. Article
  5. Article
  6. InterstitialPlants (Basel, Switzerland) · 2021
    Article
  7. Review
  8. Article
  9. Karyoevolution ofBiology open · 2019
    Article
  10. Review
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Gustavo SouzaLaboratory of Plant Cytogenetics and Evolution, Centro de Ciências Biológicas, Department of Botany, Federal University of Pernambuco, Rua Nelson Chaves S/N, Cidade Universitária, Recife, PE, 50670-420, Brazil. lgrsouza@hotmail.com.
Andre L L VanzelaLaboratory of Cytogenetics and Plant Diversity, Department of General Biology, State University of Londrina, Londrina, Paraná, Brazil.
Orfeo CrosaLaboratory of Genetics, Department of Plant Biology, Faculty of Agronomy, University of the Republic, Montevideo, Uruguay.
Marcelo GuerraLaboratory of Plant Cytogenetics and Evolution, Centro de Ciências Biológicas, Department of Botany, Federal University of Pernambuco, Rua Nelson Chaves S/N, Cidade Universitária, Recife, PE, 50670-420, Brazil.
Universidade Federal de Pernambuco · BRUniversidad de Montevideo · UYUniversidade Estadual de Londrina · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genera Nothoscordum and Ipheion (Allioideae, Amaryllidaceae) are cytologically characterized by a dysploid series with variable numbers of metacentric and acrocentric chromosomes typical of karyotypes rearranged by Robertsonian translocations (RT). Since they have large chromosomes, low diploid numbers, and possess two telomeric motifs [the vertebrate-type (TTAGGG) n and the Arabidopsis-type (TTTAGGG) n ] they are suitable for investigating the occurrence and possible role of interstitial telomeric sites (ITS) associated with RT. We analyzed the distributions of telomeric sites in 12 species of Nothoscordum and Ipheion and found that both telomeric probes colocalized in all chromosome termini. Cloning and sequencing PCR products obtained using both telomeric primers simultaneously revealed long stretches of (TTAGGG) n and (TTTAGGG) n sequences together with degenerated telomeric sequences. Most acrocentric chromosomes have a 45S rDNA site at the terminal region of the short arms adjacent to the most distal telomeric sites. Telomeric signals were found at all chromosome ends, but ITS were also detected in a few proximal and subterminal regions in some Nothoscordum species. Although RT are common in this group of plants, our findings suggest that proximal positioning of telomeric motifs are not necessarily related to that kind of rearrangement. Rather, transposition of telomeric sequences followed by amplification, could better explain the presence of (TTAGGG) n and (TTTAGGG) n repeats at those sites. Furthermore, a few small interstitial sites found in some Nothoscordum species indicate that dispersion of these sequences was not restricted to the proximal region.

Indexed as

Translocation, GeneticBase SequenceChromosomes, PlantDNA, PlantIn Situ Hybridization, FluorescenceKaryotypeLiliaceaeMolecular Sequence DataRNA, RibosomalSequence Analysis, DNATelomereDNA, PlantRNA, RibosomalRNA, ribosomal, 45S45S rDNAAsparagalesInterstitial telomeric sitesIpheionNothoscordumRobertsonian translocations

Identifiers

PMID26869260
OpenAlexW2264399132

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.